chklovski/CheckM2

Issues

• Models not loading for test run

  #119 opened 4 months ago by spennino1
  0

• When test running, it says, Error, DIAMOND failed to generate output

  #76 opened a year ago by Abelcanc3rhack3r
  8

• [Feature Request] Gzip support for precomputed gene predictions

  #118 opened 4 months ago by jolespin
  0

• Bug on a fresh install

  #115 opened 5 months ago by asaldivar93
  2

• Testrun ERROR: No DIAMOND annotation was generated.

  #105 opened 9 months ago by Mayurk619
  4

• dependency issue

  #117 opened 4 months ago by EJS01
  0

• TypeError: metaclass conflict

  #100 opened a year ago by laczik-git
  9

• Is the reference diamond database periodically being updated? How can I check if my database is still up to date?

  #116 opened 4 months ago by jvollme
  0

• Runing Checkm2 using MiDAS db

  #114 opened 5 months ago by Hedi65
  0

• TypeError: split() error

  #110 opened 7 months ago by marshjw
  6

• Naming Output TSV File

  #109 opened 8 months ago by emilyhyde
  1

• UnicodeEncodeError when running testrun and on real data.

  #112 opened 6 months ago by patriciatran
  1

• AF_UNIX path too long

  #111 opened 7 months ago by susheelbhanu
  2

• the version checkm2 v1.0.2 was not available on conda

  #94 opened 7 months ago by quliping
  1

• Got different results of the same genome from the different runs of checkm2

  #103 opened 9 months ago by quliping
  3

• Incompatible packages when installing through conda/mamba

  #70 opened 2 years ago by alexmsalmeida
  4

• Average_Gene_Length

  #89 opened 8 months ago by Sumsarium
  1

• test run yields different results

  #106 opened 8 months ago by jorondo1
  1

• checkmsum issue

  #80 opened a year ago by francesco-ricci
  2

• Database download failed

  #107 opened 9 months ago by jtamames
  3

• testrun error: AttributeError: module '__main__' has no attribute '__spec__'

  #104 opened 9 months ago by rfour92
  0

• can't install checkm2

  #69 opened 2 years ago by francesco-ricci
  4

• AttributeError: 'Predictor' object has no attribute '__set_up_prodigal_thread'

  #97 opened a year ago by MrOlm
  2

• Random errors on clusters

  #98 opened 9 months ago by yexianingyue
  3

• Can Checkm2 be fine-tuned for euMAGs?

  #102 opened 9 months ago by Andyargueasae
  1

• coding density

  #101 opened a year ago by lianzhh
  0

• Database update?

  #99 opened a year ago by cmkobel
  2

• Question about Checkm2 Annotation

  #92 opened a year ago by aljazdzy
  1

• How to remove the contamination sequence from MAGs

  #90 opened a year ago by quliping
  2

• [Feature Request] Use #!/usr/bin/env python instead of hardcoding python path

  #96 opened a year ago by jolespin
  0

• running checkm2 issue

  #82 opened a year ago by chanyuk
  8

• Error in DIAMOND execution

  #95 opened a year ago by KateSakharova
  2

• Cannot install ChekM2

  #91 opened a year ago by jehaab
  1

• Checkm2 flags certain species and genera as contaminated on a consistent basis.

  #93 opened a year ago by Fabian-Bastiaanssen
  0

• KeyError: 'key' while downloading database

  #83 opened a year ago by yazhinia
  6

• [Question] How to determine the number of splits used for Diamond annotation?

  #88 opened a year ago by jolespin
  1

• Can I use protein fasta as input?

  #87 opened a year ago by RuolinHe
  2

• checkm2 database --download fail

  #85 opened a year ago by YongxinLiu
  2

• running checkm2 on a large number of genomes

  #79 opened a year ago by sherlyn99
  2

• N50 values

  #84 opened a year ago by mallen6
  0

• OSError: [Errno 30] Read-only file system

  #73 opened a year ago by cmkobel
  3

• Small test diamond db

  #81 opened a year ago by mberacochea
  2

• There was a problem installing the database

  #72 opened a year ago by ylei14
  5

• Cannot download Diamond db

  #74 opened a year ago by s-junguy
  2

• OSError: [Errno 16] Device or resource busy: '.nfs00000000000a4c9d00005011'

  #75 opened a year ago by Louis-MG
  2

• Diamond dependency need updating to allow usage on Apple Silicon (M1/M2 Macs)

  #78 opened a year ago by lobrien20
  1

• Include more stats

  #71 opened a year ago by Sumsarium
  1

• test run giving higher completeness than expected

  #77 opened a year ago by sherlyn99
  1

• Big Data Analysis

  #67 opened 2 years ago by RoyaRahmani
  1

• unexpected end of input in testrun

  #66 opened 2 years ago by JingqiuLiao
  1