Pinned Repositories
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
emgapi
MGnify RESTful API
mettannotator
nf-modules
Microbiome Informatics NF modules and sufworkflows
emacs-config
My personal init.el setup
mjobs
just like bjobs but a bit nicer
toad
A very simple bulk task execution helper
mberacochea's Repositories
mberacochea/emacs-config
My personal init.el setup
mberacochea/mjobs
just like bjobs but a bit nicer
mberacochea/django-debug-toolbar-mongo
MongoDB panel for the Django Debug Toolbar
mberacochea/toad
A very simple bulk task execution helper
mberacochea/autoDocstring
vscode extension that generates docstrings for python files
mberacochea/bac-genomics-scripts
Collection of scripts for bacterial genomics
mberacochea/barrnap
Bacterial ribosomal RNA predictor
mberacochea/bio-cwl-tools
mberacochea/bioconda-recipes
Conda recipes for the bioconda channel.
mberacochea/bioscripts
Some simple scripts
mberacochea/cloud-toolkit
Terraform configuration to deploy nfs server on cloud infrastructures
mberacochea/conway-gol-ts
Conway's Game of Life in Typescript
mberacochea/csharp-sparkpost
SparkPost client library for the C# Programming Language
mberacochea/cwl-format
A very opinionated code formatter for CWL
mberacochea/cwltest
Framework for testing CWL tools and workflows
mberacochea/cwltool
Common Workflow Language reference implementation
mberacochea/django-rest-framework-json-api
JSON API support for Django REST Framework
mberacochea/dotkmer
A simple kmer counter in dotNet core - a toy project
mberacochea/ebi-metagenomics-webkit-example
A simple (really simple) use case of the ebi-metagenomics-webkit
mberacochea/mag
Assembly and binning of metagenomes
mberacochea/MAG_Snakemake_wf
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
mberacochea/MetaGOflow
This repository contains all CWL descriptions of the MGnify pipeline version 5.0 and their implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded project
mberacochea/microbetag
microbetag attempts to be a microbial interactions co-occurrence network annotator
mberacochea/nf-core-tools
Python package with helper tools for the nf-core community.
mberacochea/nf-prov
mberacochea/nf-validation-simple-showcase
mberacochea/seqtk
Toolkit for processing sequences in FASTA/Q formats
mberacochea/sorghum-bicolor-M81E-16S
Supplementary Material of the paper: The structure and the composition of the sweet sorghum (Sorghum bicolor) bacterial endophytic bacteriales community is affected by chemical N-fertilization in the field - NGS analysis scripts
mberacochea/streamflow
StreamFlow Workflow Manager
mberacochea/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.