mberacochea/sorghum-bicolor-M81E-16S

Supplementary Material of the paper: The structure and the composition of the sweet sorghum (Sorghum bicolor) bacterial endophytic bacteriales community is affected by chemical N-fertilization in the field - NGS analysis scripts

Requirements

• qiime 1.8
• usearch v8
• uparse python scripts

*usearch binary is expected to be called usearch8 *uparse python scripts must be on the PATH

Usage

./run_pipeline.sh reads.fq qiime_manifest.txt