patriciatran
Bioinformatician & Computational Pipeline Scientist
University of Wisconsin - MadisonMadison, WI, USA
Pinned Repositories
METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
mag
Assembly and binning of metagenomes
dsos-aemon-j-2021
Test website
LakeEnsemblR_WQ
R Package to facilitate running ensembles of water quality models
LakeMendota-PairedOmics
R code used to clean, process, merge, and visualize data related to one of my thesis chapters.
LakeTanganyika
Code to generate figures/analyses for the Lake Tanganyika project.
MAG_pipeline
🐍 🧬 Turning my metagenomic MAG (metagenome-assembled genome) pipeline into a snakemake pipeline for increased reproducibility and scalability.
MicrobialEcologyWorkshop
Files, instructions and presentation during a presentation and workshop we gave on microbial ecology during the Annual Fall Workshops in Limnology at the Interuniversity Research Group for Limnology Research (GRIL) - EcoLac.
Nitrogen_Project
Project on under-ice Nitrogen cycling in Lake Mendota, during my internship at UW-Madison in the McMahon Lab during Spring 2018.
chtc-containers
CHTC-containers
patriciatran's Repositories
patriciatran/MAG_pipeline
🐍 🧬 Turning my metagenomic MAG (metagenome-assembled genome) pipeline into a snakemake pipeline for increased reproducibility and scalability.
patriciatran/LakeMendota-PairedOmics
R code used to clean, process, merge, and visualize data related to one of my thesis chapters.
patriciatran/LakeTanganyika
Code to generate figures/analyses for the Lake Tanganyika project.
patriciatran/dsos-aemon-j-2021
Test website
patriciatran/LakeEnsemblR_WQ
R Package to facilitate running ensembles of water quality models
patriciatran/MicrobialEcologyWorkshop
Files, instructions and presentation during a presentation and workshop we gave on microbial ecology during the Annual Fall Workshops in Limnology at the Interuniversity Research Group for Limnology Research (GRIL) - EcoLac.
patriciatran/Nitrogen_Project
Project on under-ice Nitrogen cycling in Lake Mendota, during my internship at UW-Madison in the McMahon Lab during Spring 2018.
patriciatran/norbis-virome-tutorial
Tutorial files for NORBIS summer school
patriciatran/AquaticDataSciOpenSci.github.io
Simple HTML/CSS website template for a small academic conference
patriciatran/countries
patriciatran/CoverM
Read coverage calculator for metagenomics
patriciatran/ghost-crabs
My project for the Zoology 750 Problems in Oceanography Course at UW-Madison (Fall 2018).
patriciatran/Buttons
How to create Markdown buttons.
patriciatran/misc_scripts
Miscellaneous scripts to deal with genomic sequences
patriciatran/mtlMicro
Presentations, code sharing for the mtlMICRO group.
patriciatran/MyMendota
Scripts for visualizing Lake Mendota data to use with McMahon Lab and NTL-LTER outreach.
patriciatran/patriciatran.github.io
Personal blog & info
patriciatran/planets
Microbiome Hub workshop on using GitHub