Anantharaman Microbiome Lab at UW-Madison
Software and Databases developed by the Anantharaman Lab
Madison, WI
Pinned Repositories
annoVIBRANT
Annotation-only wrapper for VIBRANT
Hydrothermal_plume_omics_Zhou_et_al._2021
Bioinformatic analyzing methods for hydrothermal plume omics paper
Kieft_and_Zhou_et_al._2020
METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
PropagAtE
Prophage Activity Estimator
Prophage-DB
Prophage-DB scripts for generating figures
vClassifier
Species-level taxonomic classification of viruses
VIBRANT
Virus Identification By iteRative ANnoTation
ViWrap
A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
vRhyme
Binning Virus Genomes from Metagenomes
Anantharaman Microbiome Lab at UW-Madison's Repositories
AnantharamanLab/METABOLIC
A scalable high-throughput metabolic and biogeochemical functional trait profiler
AnantharamanLab/VIBRANT
Virus Identification By iteRative ANnoTation
AnantharamanLab/ViWrap
A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
AnantharamanLab/vRhyme
Binning Virus Genomes from Metagenomes
AnantharamanLab/PropagAtE
Prophage Activity Estimator
AnantharamanLab/Kieft_and_Zhou_et_al._2020
AnantharamanLab/Hydrothermal_plume_omics_Zhou_et_al._2021
Bioinformatic analyzing methods for hydrothermal plume omics paper
AnantharamanLab/annoVIBRANT
Annotation-only wrapper for VIBRANT
AnantharamanLab/Prophage-DB
Prophage-DB scripts for generating figures
AnantharamanLab/vClassifier
Species-level taxonomic classification of viruses
AnantharamanLab/ViromeVsMetagenome
AnantharamanLab/bioconda-recipes
Conda recipes for the bioconda channel.
AnantharamanLab/Diao_et_al_2023
AnantharamanLab/doden_et_al_2021
AnantharamanLab/Kieft_et_al_2021_organosulfur_AMGs
AnantharamanLab/SulfurReviewPaper
The procedures for Sulfur Review Paper
AnantharamanLab/.github
AnantharamanLab/Clostridium_scindens_mining
AnantharamanLab/Phage_T7
AnantharamanLab/TYMEFLIES_Viral
The scripts for the project of "TYMEFLIES_Viral"
AnantharamanLab/V-Score-Search
Searchable Database for V-Scores from VOG, PHROG, KEGG, eggNOG, and Pfam