AnantharamanLab/METABOLIC

Issues

• Disable hard-coded cpu count for test

  #194 opened 2 months ago by rfox-mbl
  0

• When running metabolic-c, I get the following error:

  #190 opened 3 months ago by HAIS-st
  3

• Mistake in the description of hzoA gene in the final table

  #186 opened 5 months ago by Tarasovk49
  0

• mv: cannot stat '/home/adm/dingyi/metabolicC/Output_energy_flow/Energy_plot/network.plot.pdf': No such file or directory

  #191 opened 3 months ago by yi-dingg
  1

• WHY only 1 CPU when hmmsearch

  #182 opened 7 months ago by PonderLi
  1

• readline() on closed filehandle _IN at METABOLIC-C.pl line 1909. Cannot fork: Cannot allocate memory at /home/hyShen/miniconda3/envs/METABOLIC

  #193 opened 3 months ago by hyShen-hzau
  6

• readline() on closed filehandle _IN at METABOLIC-C.pl line 1909.

  #192 opened 3 months ago by hyShen-hzau
  0

• Issues installing required R packages

  #183 opened 7 months ago by brauliovill
  1

• Hi @patriciatran, Mrtabolic-c was unsuccessful in producing All_gene_collections_mapped.depth.txt documents

  #181 opened 3 months ago by HAIS-st
  0

• Can't find any loadable formatter class in Pod::Perldoc::Toterm

  #189 opened 4 months ago by timeresistance1996
  0

• metatranscriptomic errors

  #188 opened 4 months ago by LiZhihua1982
  0

• metatranscriptomic analysis error

  #187 opened 4 months ago by LiZhihua1982
  0

• Cannot allocate memory

  #185 opened 6 months ago by Fervitttt
  0

• Sulfite oxidation/Sulfate Reduction

  #184 opened 6 months ago by Drob84761
  0

• The result files "All_gene_collections_mapped.depth.txt" ,"Functional_network_figures" are empty.

  #177 opened 9 months ago by mojingmj123
  2

• CoverM parameters and Taxonomy Figures

  #160 opened a year ago by cmmertz
  1

• Bio::Perl instalation

  #175 opened 10 months ago by diogoburgos
  1

• Perl version conflict when installing via YAML

  #180 opened 9 months ago by gcremers
  0

• Running 7000+MAGs, no progress after Prodigal

  #174 opened 10 months ago by Burgersnow
  3

• cannot locate statistic/descriptive.pm in for metabolic-c.pl line 40

  #179 opened 9 months ago by laibinhuang
  0

• Can metabolic used for annotation of virus genome?

  #178 opened 9 months ago by xjhzjucas
  2

• Access to test filés in google drive

  #176 opened 10 months ago by diogoburgos
  2

• Output_energy_flow/Energy_plot/network.plot.pdf': No such file or directory

  #166 opened 10 months ago by ntromas
  1

• Possibly wrong link for MEROPS in run_to-setup.sh

  #169 opened 10 months ago by CristinaMoraru
  1

• How to get access to test google drive files?

  #172 opened 10 months ago by Henryranger888
  2

• The gtdbtk module throws an error: 'EXCEPTION: OSError MESSAGE: [Errno 12] Cannot allocate memory‘ when running METABOLIC-C.pl.

  #173 opened 10 months ago by ZhengXiaoxuan11542
  2

• Plot sankey diagram at different classification levels?

  #162 opened a year ago by chengzhongyi8
  1

• What are values in Sequential_Transformation_input_2 based on?

  #171 opened a year ago by LunavdL
  0

• Should the arrow of Step8: Nitrite ammonification start from nitrate or nitrite?

  #170 opened a year ago by huizhen-yan
  1

• Installation on Server Issues

  #164 opened a year ago by Calvin2077
  4

• (Question) Can you give it proteins instead of genomes?

  #168 opened a year ago by jolespin
  0

• Not a bug/ only a question

  #167 opened a year ago by Sharifah89
  0

• error with All_gene_collections.gene

  #165 opened a year ago by myonaung
  0

• .yml file bug and about the test files download

  #163 opened a year ago by xjhzjucas
  0

• GTDB version

  #150 opened a year ago by CynthiaChibani
  8

• I get two different results using when I run the METABOLIC-G on the same genome.

  #161 opened a year ago by Sharifah89
  2

• Error with conda installation

  #156 opened a year ago by priscillaisaac98
  3

• XS.c: loadable library and perl binaries are mismatched (got handshake key 0xde00080, needed 0xdb00080)

  #159 opened a year ago by Sharifah89
  0

• The empty value in the MW-score_result.txt

  #158 opened a year ago by haihao999
  0

• Cannot create directory ... Permission denied

  #157 opened a year ago by Valentin-Bio
  0

• Coverage value(average)

  #154 opened a year ago by Drob84761
  5

• This script is for a 2nd run using the previous genome annotation results. Please provide the output folder of the previous run

  #155 opened a year ago by Sharifah89
  0

• MW-score_result_table_input.txt function 1 and function 2 clarification

  #147 opened a year ago by Drob84761
  0

• Empty output files after running METABOLIC-C

  #153 opened a year ago by Valentin-Bio
  1

• Perl issue with test run and installation

  #152 opened a year ago by Breakcontinue2
  1

• Calculation of gene coverage

  #146 opened a year ago by akbyers
  4

• METABOLIC-C issue?

  #151 opened a year ago by labrat789
  5

• All cells of sheets of METABOLIC result table show absent/none

  #149 opened a year ago by talam-biotech
  3

• Transcripts

  #148 opened a year ago by Drob84761
  0

• Is it possible to do the METABOLIC_C with the contigs not the genomes?

  #145 opened a year ago by Sharifah89
  3