AnantharamanLab/vRhyme

Issues

• No bins created-- did we do something wrong or are there really no bins?

  #37 opened 2 months ago by rikander
  5

• Error. No file(s) for coverage information were identified. Check coverage inputs (c/b/s/r/u/v). Exiting.

  #33 opened 9 months ago by metapanpanwang
  2

• Can you provide the code for evaluating the performance?

  #36 opened 3 months ago by jiaojiaoguan
  1

• vRhyme error code

  #35 opened 6 months ago by kangeun-kim
  1

• Error after Performing machine learning classification

  #32 opened 9 months ago by Aciole-David
  2

• No bins generated, bug or feature?

  #28 opened a year ago by Joon-Klaps
  2

• p

  #34 opened 9 months ago by clementcoclet
  0

• One merged fa can't not map to 63 individual bam file

  #31 opened 9 months ago by Rhettbest
  2

• Error. No file(s) for coverage information were identified. Check coverage inputs (c/b/s/r/u/v). Exiting.

  #26 opened a year ago by haleyhallowell
  3

• Program trying to read from non-existing output file

  #21 opened 2 years ago by minna-miha
  6

• Scikit-learn version issue ```ValueError: node array from the pickle has an incompatible dtype```

  #30 opened a year ago by erfanshekarriz
  1

• Dereplication. Question.

  #29 opened a year ago by SergeyBaikal
  0

• [Question] Is this for binning contigs from the same viral genome or clustering viral genomes?

  #27 opened a year ago by jolespin
  3

• i made a mistake. i have no idea with it. need some help

  #24 opened a year ago by liucong2016
  12

• question about using vRhyme

  #25 opened a year ago by liucong2016
  1

• vRhyme 'incompatible dtype' in modules

  #23 opened a year ago by cam315
  2

• How to prepare coverage_values.tsv file?

  #22 opened 2 years ago by WoCer2019
  1

• How to know which viral sequences are not used in binning?

  #15 opened 2 years ago by AJWing
  4

• I encountered an error using the script `coverage_table_convert.py`

  #20 opened 2 years ago by rdenise
  1

• High number of bacterial genes in vRhyme bins

  #19 opened 2 years ago by ShailNair
  6

• checkV

  #4 opened 3 years ago by ntromas
  5

• Assessing the quality of vMAGs

  #18 opened 2 years ago by quliping
  0

• Training DATA AVAILABILITY

  #17 opened 2 years ago by Nianzhen-GU
  0

• performing taxonomy classifications on vrhyme bins

  #16 opened 2 years ago by AJWing
  1

• Issue on the clustering algorithm

  #14 opened 2 years ago by dyxstat
  1

• Bare minimum input

  #11 opened 2 years ago by AJWing
  2

• Suitability for binning Eukaryotic viral sequences derived from SAGs

  #13 opened 2 years ago by felipehcoutinho
  2

• vRhyme_nucmer_delta_parsed.tsv not found

  #12 opened 2 years ago by XiongGZ
  2

• Release versions format

  #9 opened 2 years ago by jayramr
  4

• Regarding dereplication of bins

  #10 opened 2 years ago by ShailNair
  4

• Question about the vRhyme paper

  #8 opened 2 years ago by Nianzhen-GU
  2

• How to concatenate the contigs of vMAGs into a single sequence

  #7 opened 3 years ago by mijiandui
  0

• Interpretation of results

  #5 opened 3 years ago by michoug
  3

• input file if relative path seems don't work well

  #6 opened 3 years ago by zpinocchio
  1

• "ET model: Not found"

  #3 opened 3 years ago by KrisKieft
  0

• No such file or directory vRhyme_nucmer_delta_parsed.tsv

  #2 opened 3 years ago by JSSaini
  14

• input fasta file

  #1 opened 3 years ago by slambrechts
  5