Pinned Repositories
pavian
🌈 Interactive analysis of metagenomics data
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
atlas
ATLAS - Three commands to start analyzing your metagenome data
MAG_Snakemake_wf
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
magscreen
Snakemake workflow to screen a set of genomes (e.g., MAGs) against an existing genome database and identify novel species
metabaR
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
microfiltR
accessory functions for processing microbial community data
virsearch
Snakemake workflow to detect and classify viruses in metagenome assemblies.
vsearch
Versatile open-source tool for microbiome analysis
slambrechts's Repositories
slambrechts/atlas
ATLAS - Three commands to start analyzing your metagenome data
slambrechts/MAG_Snakemake_wf
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
slambrechts/magscreen
Snakemake workflow to screen a set of genomes (e.g., MAGs) against an existing genome database and identify novel species
slambrechts/metabaR
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
slambrechts/microfiltR
accessory functions for processing microbial community data
slambrechts/virsearch
Snakemake workflow to detect and classify viruses in metagenome assemblies.