erfanshekarriz

Ph.D. Genomic Data Analytics & Machine Learning at The University of Hong Kong.

The University of Hong KongHong Kong

Pinned Repositories

pyhmmer
Cython bindings and Python interface to HMMER3.
Language:Cython120 7 6112
vRhyme
Binning Virus Genomes from Metagenomes
Language:Python55 3 359
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Language:Python119 7 7016
entrez-parallel
A parrallelized version of entrez-direct functions that uses GNU parallel.
Language:Shell2 1 00
ML_miniprojects
Sample mini projects for implementing novel machine learning algorithms for biological applications. All projects can be adapted for your practice needs as well!
Language:Jupyter Notebook00
SeepFungiNet2022
Language:HTML01
tarafungi
Language:R00
VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data
Language:Python212 4 20628
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Language:HTML2.2k 19 1.7k543
CoverM
Read coverage calculator for metagenomics
Language:Rust294 11 15929

erfanshekarriz/entrez-parallel
A parrallelized version of entrez-direct functions that uses GNU parallel.
Language:Shell2 1 00
erfanshekarriz/ML_miniprojects
Sample mini projects for implementing novel machine learning algorithms for biological applications. All projects can be adapted for your practice needs as well!
Language:Jupyter Notebook00
erfanshekarriz/SeepFungiNet2022
Language:HTML01
erfanshekarriz/tarafungi
Language:R00