erfanshekarriz
Ph.D. Genomic Data Analytics & Machine Learning at The University of Hong Kong.
The University of Hong KongHong Kong
Pinned Repositories
pyhmmer
Cython bindings and Python interface to HMMER3.
vRhyme
Binning Virus Genomes from Metagenomes
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
entrez-parallel
A parrallelized version of entrez-direct functions that uses GNU parallel.
ML_miniprojects
Sample mini projects for implementing novel machine learning algorithms for biological applications. All projects can be adapted for your practice needs as well!
SeepFungiNet2022
tarafungi
VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
CoverM
Read coverage calculator for metagenomics
erfanshekarriz's Repositories
erfanshekarriz/entrez-parallel
A parrallelized version of entrez-direct functions that uses GNU parallel.
erfanshekarriz/ML_miniprojects
Sample mini projects for implementing novel machine learning algorithms for biological applications. All projects can be adapted for your practice needs as well!
erfanshekarriz/SeepFungiNet2022
erfanshekarriz/tarafungi