jiarong/VirSorter2

Issues

• The 'final-viral-combined-for-dramv.fa' file contains longer sequences than that with the same ID in the "final-viral-combined.fa" file

  #213 opened 3 months ago by 473021677
  1

• viral classification failure

  #215 opened 2 months ago by rocherbpb
  3

• CreateCondaEnvironmentException: Could not create conda environment

  #214 opened 3 months ago by JCHmu
  0

• error of step3

  #204 opened 5 months ago by 2061574124
  7

• Error message in "circular-linear-split"

  #212 opened 4 months ago by adijatj
  4

• The 'final-viral-combined-for-dramv.fa' file contains sequences with the same ID

  #210 opened 4 months ago by llechoecho
  2

• An error

  #211 opened 4 months ago by baidefeng
  1

• Run stop

  #199 opened 5 months ago by ntromas
  10

• Compatibility issue of scikit-learn 0.22.1 with python 3.9 in virsorter run

  #207 opened 5 months ago by ChristosMatzoros
  1

• run error

  #208 opened 5 months ago by Xugh1
  3

• GUROBI error:

  #209 opened 5 months ago by WhatChan123
  3

• run error

  #206 opened 5 months ago by Xugh1
  3

• Questions for use in a Galaxy tool wrapper

  #205 opened 5 months ago by bernt-matthias
  4

• Error in rule classify_by_group:

  #190 opened 9 months ago by xjhzjucas
  11

• Virsorter2 Compatibility on MacOS: Usage and Limitations

  #201 opened 5 months ago by ChristosMatzoros
  2

• Validation of Database Fetching

  #203 opened 5 months ago by ChristosMatzoros
  1

• run issues

  #202 opened 5 months ago by Xugh1
  2

• mamba activate vs2 fail,why?

  #200 opened 6 months ago by iamamking
  3

• The output files don't update

  #198 opened 7 months ago by Betula0422
  4

• Need help in understanding the output file

  #195 opened 7 months ago by sahilrishav2
  8

• error in running test

  #197 opened 7 months ago by tianyi1616
  1

• Error when running VirSorter2 without circular seqs

  #196 opened 7 months ago by danim0
  2

• Virsorter2 renames Contig fasta headers

  #193 opened 8 months ago by Platelmin1o
  1

• run a test: Error in rule circular_linear_split:

  #194 opened 8 months ago by tianyi1616
  1

• JSONDecodeError

  #192 opened 9 months ago by shaconn
  1

• Database update

  #191 opened 9 months ago by blaizereal
  1

• -j 30 Does not match the actual number of working threads. Why

  #166 opened a year ago by qkqk-hub
  6

• Error:non-zero exit code

  #181 opened 9 months ago by jojyjohn28
  7

• I only need the information of seqname and group columns in the final-viral-boundary.tsv file,Is there any way to speed things up?

  #188 opened a year ago by qkqk-hub
  1

• Conda install dependencies issue

  #189 opened 10 months ago by vir-user
  1

• virsorter2 error

  #187 opened a year ago by Microbion
  2

• how does VirSorter2 distinguish circular sequences?

  #186 opened a year ago by marade
  2

• singluarity

  #185 opened a year ago by wuhuiyun07
  1

• Error:Duplicate seqname detected in .../....fna,Please make sure all sequence names are unique..

  #184 opened a year ago by eiko33
  2

• about conda

  #183 opened a year ago by ZT-ls
  1

• CP12 in affi contigs file

  #182 opened a year ago by Drob84761
  1

• Error in rule merge_split_hmmtbl_by_group_tmp:

  #177 opened a year ago by ileleiwi
  4

• FileNotFoundError virsorter/group file and with the test run

  #174 opened a year ago by LaurenceHdL
  8

• Error in rule gene_call

  #178 opened a year ago by fhdbqr
  1

• [BUG] in writeMPS with open(filename, "w") as f: FileNotFoundError: [Errno 2] No such file or directory: 'tmp/d43ef73e150d46648f4e326813c760da-pulp.mps'

  #176 opened a year ago by erfanshekarriz
  2

• long-reads

  #175 opened a year ago by katievigil
  4

• Error in rule classify_full_and_part_by_group:

  #173 opened a year ago by TiAmoTYX
  6

• VirSorter2 error in hmmserch step

  #172 opened a year ago by huajiachicat
  4

• Numpy float error not fixed in version 2.2.4

  #169 opened a year ago by DNADoubleFelix
  2

• How to generate viral-affi-contigs-for-dramv.tab for dramv on viral genomes from multiple tools?

  #171 opened a year ago by krausfeldtle
  3

• control conda environment prefix

  #170 opened a year ago by jowodo
  1

• Error in rule hmmsearch:

  #167 opened a year ago by quliping
  5

• error with an RNA group

  #168 opened a year ago by trilisser
  6

• Hallmark gene of each genome

  #165 opened a year ago by YuyaKiguchi
  1

• ValueError

  #164 opened 2 years ago by MalloryCunninghamVCU
  1