Pinned Repositories
bac-genomics-scripts
Collection of scripts for bacterial genomics
bin_polisher
Purify pre-generated bins (e.g. using Maxbin) based on z-score differences in contig coverage using multiple sequencing datasets
bioconda-recipes
Conda recipes for the bioconda channel.
bioconda-utils
Utilities for building and managing bioconda recipes
fasta2phylip
simple conversion of fasta alignments to phylip
fastq2fasta
simple fastq to fasta conversion
PO_2_GENECONTENT
Generate GeneContent trees based on based the presence or absence of Genes from a given bacterial pan-genome using bidirectional BLAST results obtained with proteinortho
PO_2_MLSA
Enables the calculation of phylogenies based on single copy core genome gene products, based on bidirectional BLAST results obtained with proteinortho
jvollme's Repositories
jvollme/fasta2phylip
simple conversion of fasta alignments to phylip
jvollme/PO_2_MLSA
Enables the calculation of phylogenies based on single copy core genome gene products, based on bidirectional BLAST results obtained with proteinortho
jvollme/PO_2_GENECONTENT
Generate GeneContent trees based on based the presence or absence of Genes from a given bacterial pan-genome using bidirectional BLAST results obtained with proteinortho
jvollme/bin_polisher
Purify pre-generated bins (e.g. using Maxbin) based on z-score differences in contig coverage using multiple sequencing datasets
jvollme/bac-genomics-scripts
Collection of scripts for bacterial genomics
jvollme/bioconda-recipes
Conda recipes for the bioconda channel.
jvollme/bioconda-utils
Utilities for building and managing bioconda recipes
jvollme/fastq2fasta
simple fastq to fasta conversion
jvollme/GroopM
Metagenomic binning suite
jvollme/Krona
Interactively explore metagenomes and more from a web browser.
jvollme/mdmcleaner
MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
jvollme/po2pocp
Calculates pairwise pocp values from proteinortho5 results.
jvollme/prokka
Rapid prokaryotic genome annotation
jvollme/wget-feedstock
A conda-smithy repository for wget.