jvollme

jvollme's Stars

• freeCodeCamp/freeCodeCamp

  freeCodeCamp.org's open-source codebase and curriculum. Learn to code for free.

  Language:TypeScript405k8.6k18.4k38k

• ossu/computer-science

  🎓 Path to a free self-taught education in Computer Science!

  172k5.8k64521.8k

• jlevy/the-art-of-command-line

  Master the command line, in one page

  154k2.8k25314.6k

• trimstray/the-book-of-secret-knowledge

  A collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.

  148k2.5k09.6k

• microsoft/generative-ai-for-beginners

  21 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

  Language:Jupyter Notebook65k55412833.1k

• scrapy/scrapy

  Scrapy, a fast high-level web crawling & scraping framework for Python.

  Language:Python53.1k1.8k3k10.6k

• mattermost/mattermost

  Mattermost is an open source platform for secure collaboration across the entire software development lifecycle..

  Language:TypeScript30.7k5468.7k7.4k

• bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.

  Language:Shell1.6k971.9k3.3k

• weizhongli/cdhit

  Automatically exported from code.google.com/p/cdhit

  Language:Perl64128133129

• voutcn/megahit

  Ultra-fast and memory-efficient (meta-)genome assembler

  Language:C++59737334135

• hyattpd/Prodigal

  Prodigal Gene Prediction Software

  Language:C446269885

• afwbkbc/glsmac

  Unofficial open-source OpenGL/SDL2 reimplementation of Sid Meier's Alpha Centauri ( + Alien Crossfire )

  Language:C++421301512

• RasmussenLab/vamb

  Variational autoencoder for metagenomic binning

  Language:Python255722546

• widdowquinn/pyani

  Application and Python module for average nucleotide identity analyses of microbes.

  Language:Python1971225455

• cmks/DAS_Tool

  DAS Tool

  Language:R14099717

• loneknightpy/idba

  Language:C++124115853

• ncbi/SKESA

  SKESA assembler

  Language:C++112174319

• nick-youngblut/gtdb_to_taxdump

  Convert GTDB taxonomy to NCBI taxdump format

  Language:Python6651813

• rhysnewell/rosella

  Metagenomic Binning Algorithm

  Language:Rust385353

• ncbi/pm4ngs

  Project Manager for NGS data analysis

  Language:Python2718010

• leylabmpi/DeepMAsED

  Deep learning for Metagenome Assembly Error Detection

  Language:Jupyter Notebook26496

• widdowquinn/scripts

  Miscellaneous scripts

  Language:Python228719

• tetramerFreqs/Binning

  Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Community-wide analysis of microbial genome sequence signatures. Genome Biology, 10: R85

  Language:Perl1711512

• younglululu/COCACOLA

  COCACOLA: a general framework for binning contigs in metagenomic studies incorporating read COverage, CorrelAtion, sequence COmposition and paired-end read LinkAge

  Language:Matlab172114

• veidenberg/wasabi

  Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org

  Language:JavaScript162267

• sandberg-lab/Spreading-Correction

  Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).

  Language:Jupyter Notebook15464

• marbl/VALET

  A pipeline for detecting mis-assemblies in metagenomic assemblies.

  Language:TeX147114

• CK7/abawaca

  abawaca is a binning program for metagenomics

  Language:C++13772

• marcelotrevisani/grayskull

  Grayskull :skull: - Recipe generator for Conda

  Language:Python5204

• rec3141/hima

  A Meta-database of Low Temperature Genomes and Metagenomes

  3300