nick-youngblut/gtdb_to_taxdump

Issues

• ngsLCA: ngsLCA.cpp:60: void mod_db(int*, int*, int2int&, int2char&, int2char&): Assertion `parent.count(out[i])==1'

  #24 opened 3 months ago by itpcas-zcb
  1

• KeyError: 'Cannot find GCA003697015.1 accession in names.dmp'

  #23 opened a year ago by bheimbu
  3

• Remove the name of the genome from the results generated by gtdb_to_taxdump.py

  #22 opened a year ago by wqssf102
  1

• lineage2taxid error (module 'gtdb_to_taxdump' has no attribute 'Dmp')

  #14 opened a year ago by emaxortiz
  2

• Unclassified sequences TAXID

  #13 opened a year ago by maxibor
  3

• Preserve IDs

  #8 opened a year ago by andrewjmc
  7

• Using different starting NCBI taxonomy gives different results

  #2 opened a year ago by Jigyasa3
  8

• Question about ncbi-gtdb_map.py

  #15 opened a year ago by andressamv
  3

• KeyError: 'Cannot find "ncbi_taxonomy"'

  #21 opened a year ago by jiaojiaoguan
  3

• ncbi-gtdb_map.py (GTDB => NCBI) results in all NAs

  #20 opened 2 years ago by Somebodyatthdoor
  4

• AttributeError: module 'gtdb_to_taxdump' has no attribute 'Dmp'

  #16 opened 2 years ago by Sidduppal
  9

• KeyError with `acc2gtdb_tax.py`

  #17 opened 2 years ago by Sidduppal
  2

• Error in ncbi-gtdb_map.py using NCBI taxids

  #9 opened 3 years ago by dportik
  4

• ncbi-gtdb_map.py fails on importing networkx.algorithms.lowest_common_ancestors

  #7 opened 3 years ago by kevinmyers
  2

• how to install?

  #6 opened 4 years ago by gruningerrj
  1

• GTDB to NCBI mapping results in empty taxa

  #4 opened 4 years ago by Askarbek-orakov
  10

• KeyError: 'orig_name'

  #5 opened 4 years ago by Askarbek-orakov
  2

• "gtdb_to_diamond.py" generates an empty "gtdb_all.faa.gz" file

  #3 opened 4 years ago by Jigyasa3
  3