maxibor

Postdoctoral researcher in life data science.

Max Planck institute for Evolutionary AnthropologyLeipzig, Germany

Pinned Repositories

adrsm
Ancient DNA Read Simulator for Metagenomic
Language:HTML5 2 41
comp_dnds
Measure evolutionary pressure by efficiently computing dN/dS according to the Nei-Gojobori method
Language:Python8 2 00
conda-package-publish-action
Github Action to deploy conda package to Anaconda repository
Language:Shell12 2 020
meetdock
Protein-Protein Docking software
Language:Java6 3 33
pcrEfficiency
pcr efficiency predictor
Language:Python7 2 01
protinter
Protein interaction calculator
Language:Python7 2 14
pydamage
Damage parameter estimation for ancient DNA
Language:Python11 3 144
sam2lca
Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
Language:Python9 3 74
sourcepredict
Prediction/source tracking of metagenomic samples source using machine learning
Language:Python7 2 32
coproid
Coprolite host Identification pipeline
Language:Nextflow9 76 74

maxibor's Repositories

maxibor/pydamage
Damage parameter estimation for ancient DNA
Language:Python11 3 144
maxibor/sam2lca
Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
Language:Python9 3 74
maxibor/comp_dnds
Measure evolutionary pressure by efficiently computing dN/dS according to the Nei-Gojobori method
Language:Python8 2 00
maxibor/sourcepredict
Prediction/source tracking of metagenomic samples source using machine learning
Language:Python7 2 32
maxibor/adrsm
Ancient DNA Read Simulator for Metagenomic
Language:HTML5 2 41
maxibor/microbiome_tutorial
Microbiome analysis tutorial
Language:HTML3 2 0
maxibor/ncbi-genome-download
Python script for downloading bacterial genomes from NCBI ftp
Language:Python3 2 01
maxibor/floria-strainer
An add-on to floria for clustering reads into strains
Language:Python2 1 0
maxibor/statannotations
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
Language:Python2 0 0
maxibor/adnamap
aDNA mapping to multiple genomes
Language:Nextflow1 1 21
maxibor/corecomb
Toolkit to deal with core-genome alignments recombination detection
Language:Jupyter Notebook1 1 0
maxibor/corephylo
core genome phylogenies
Language:Groovy1 1 0
maxibor/mgenottate
Language:Nextflow1 1 0
maxibor/pydamage_poster
poster of pydamage
Language:Jupyter Notebook1 2 0
maxibor/amdirt
AncientMetagenomeDir Toolkit
Language:Python0 0 00
maxibor/AMPcombi
For testing out the ampcombi tool for running amp tools.
Language:Python0 0
maxibor/bim
Language:Python0 0
maxibor/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell2 02
maxibor/configs
Config files used to define parameters specific to compute environments at different Institutions.
Language:Nextflow2 0
maxibor/coproID
Coprolite host Identification
Language:Nextflow3 11
maxibor/fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
Language:Nextflow0 0
maxibor/ibis
The flexibility of Python with the scale and performance of modern SQL.
Language:Python0 0
maxibor/mag
Assembly and binning of metagenomes
Language:Nextflow1 0
maxibor/maxibor.github.io
Language:HTML1 0
maxibor/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow0 0
maxibor/panaroo
An updated pipeline for pangenome investigation
Language:Python0 0
maxibor/RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
Language:Python
maxibor/scikit-allel
A Python package for exploring and analysing genetic variation data
maxibor/taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Language:Nextflow0 0
maxibor/uvk5-chirp-driver
Quanscheng UV-K5 radio CHIRP driver for Egzumer firmware
Language:Python0 0