hyattpd/Prodigal

Issues

• GFF mismatch

  #114 opened 2 months ago by juanjo255
  1

• Can I use Prodigal to predict fungal genes?

  #111 opened 7 months ago by mojiefei
  1

• Parameter of lenght of ORFS

  #69 opened 5 years ago by mattoslmp
  4

• Broken website link

  #112 opened 7 months ago by tvtv195
  1

• Using different Start Codons

  #113 opened 6 months ago by Kash-Pandz
  0

• prodigal on metatranscriptome assembly

  #110 opened 8 months ago by ckeuschn
  0

• Question about gene coordinates

  #109 opened 10 months ago by pipparichter
  0

• gcc: error: language CORE-AVX2 not recognized

  #92 opened 2 years ago by morgansobol
  1

• New version discussion: genetic codes

  #62 opened 5 years ago by hyattpd
  5

• Prodigal on short metagenomic reads

  #107 opened a year ago by EorgeKit
  0

• how to edit the source code to change the length of genes

  #106 opened a year ago by KeyLllll
  0

• strand orientation

  #105 opened a year ago by mmpust
  0

• Installation issue

  #104 opened a year ago by Rr9825
  1

• What Details of '-g' parameters are?

  #93 opened 2 years ago by timeresistance1996
  1

• Does training prodigal on multiple genomes instead of just one increase accuracy?

  #87 opened a year ago by avilaHugo
  1

• only a star in a sequence

  #103 opened a year ago by jianshu93
  0

• Issue with output file content

  #99 opened 2 years ago by soluna1
  1

• Please make a release

  #97 opened 2 years ago by yurivict
  2

• The minimum and maximum length of predicted genes

  #98 opened 2 years ago by ZhangDengwei
  0

• Prodigal v2.6.3 no stop_type output

  #91 opened 2 years ago by Jemimacat
  1

• Does metaprodigal indicate which codon table was used for each gene?

  #74 opened 5 years ago by durrantmm
  2

• Differences in gene prediction for forward and reverse sequences

  #90 opened 2 years ago by caballero
  0

• Gene calling on very short viral sequences

  #89 opened 3 years ago by karchern
  0

• New version discussion: input/output formats

  #63 opened 5 years ago by hyattpd
  10

• Predicted CDSs of plasmid AF149757.1 have interior stop codons

  #86 opened 3 years ago by vbrover
  0

• New version discussion: use of evidence (prokaryotes)

  #65 opened 5 years ago by hyattpd
  12

• -w command for summary statistic returns error

  #85 opened 4 years ago by MajaCN
  3

• Virus prediction

  #84 opened 4 years ago by maocheng2020
  0

• New version discussion: feature requests

  #64 opened 5 years ago by hyattpd
  16

• fasta files - empty lines handling

  #83 opened 4 years ago by GaioTransposon
  0

• tinf->rbs_wt hadn't been reset before used

  #78 opened 4 years ago by Hocnonsense
  1

• Asterix at the end of translated protein sequences

  #82 opened 4 years ago by CuriousTim
  0

• real difference between meta and single when the -p

  #81 opened 4 years ago by li0604
  0

• Genes are predicted across N stretches even when providing the -m flag

  #80 opened 4 years ago by fpusan
  3

• [Documentations/Examples] Could a few examples be added to the main readme or a linked site?

  #79 opened 4 years ago by rubyFeedback
  0

• wrong orf of interest

  #76 opened 5 years ago by claudelelemaystdenis
  2

• explanation of parameters in node.h file

  #73 opened 5 years ago by pila76
  3

• reverse mapping of annotations

  #75 opened 5 years ago by noahaus
  1

• Prodigal still processes gzip'ed files with no error

  #72 opened 5 years ago by nick-youngblut
  3

• installation issue

  #70 opened 5 years ago by lz870718
  2

• Prodial .gbk output has no sequences in it.

  #71 opened 5 years ago by Rob-murphys
  1

• gene length cutoff

  #59 opened 5 years ago by DaanJansen94
  3

• can prodigal predict metatranscriptome?

  #68 opened 5 years ago by ucassee
  4

• New version discussion: relevant publications

  #67 opened 5 years ago by tseemann
  2

• Could I use Prodigal for plant ORFs prediction?

  #66 opened 5 years ago by WeiDong-Sanderson
  1

• Unsafe code

  #56 opened 5 years ago by danilexn
  2

• Use -p single or -p meta for metagenomic bins

  #57 opened 5 years ago by SarahIsme
  3

• [regression in 2.60] The 'install' target is gone from Makefile

  #61 opened 5 years ago by yurivict
  2

• Twitter asks if this project is still alive

  #60 opened 5 years ago by tseemann
  5

• I forgot to pass the -d option...will I have to rerun

  #58 opened 5 years ago by slvrshot
  1