mattoslmp
Computational and Systems Biologist PhD from Fiocruz, Brazil - RJ
Computational and System BiologistBrazil
Pinned Repositories
16S-ITGDB
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
add-tax-pred_metagenome_contrib_Picrust2
AgenticAGI
Advanced Strawberry Logic for All LLMs
AgentLite
annie
annie = ANNotation Information Extractor
Annotation-genome-graphics
R scripts for genome annotation graphs
Cancer-transcriptomics
mattoslmp.github.io
Microbiota-MetaAnalyser
Microbiota Coral 16S MetaAnalyser
primrose
Predict 5mC in PacBio HiFi reads
mattoslmp's Repositories
mattoslmp/Annotation-genome-graphics
R scripts for genome annotation graphs
mattoslmp/Cancer-transcriptomics
mattoslmp/mattoslmp.github.io
mattoslmp/Microbiota-MetaAnalyser
Microbiota Coral 16S MetaAnalyser
mattoslmp/AgentLite
mattoslmp/AI-Scientist
The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑🔬
mattoslmp/applied-ml
📚 Papers & tech blogs by companies sharing their work on data science & machine learning in production.
mattoslmp/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
mattoslmp/esm-variants
mattoslmp/ESP
mattoslmp/eureka-ml-insights
A framework for standardizing evaluations of large foundation models, beyond single-score reporting and rankings.
mattoslmp/evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
mattoslmp/flux-fine-tuner
Cog wrapper for ostris/ai-toolkit + post-finetuning cog inference for flux models
mattoslmp/GECKO
Toolbox for including enzyme constraints on a genome-scale model.
mattoslmp/GeneGrouper
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
mattoslmp/Geospatial_Foundation_Models
mattoslmp/helm-gpt
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer
mattoslmp/kan-network
A comprehensive collection of KAN(Kolmogorov-Arnold Network)-related resources, including libraries, projects, tutorials, papers, and more, for researchers and developers in the Kolmogorov-Arnold Network field.
mattoslmp/NeuralPLexer
NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
mattoslmp/openai-cookbook
Examples and guides for using the OpenAI API
mattoslmp/paper-qa
High accuracy RAG for answering questions from scientific documents with citations
mattoslmp/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
mattoslmp/ProstT5
Bilingual Language Model for Protein Sequence and Structure
mattoslmp/protein_scoring
Generating and scoring novel enzyme sequences with a variety of models and metrics
mattoslmp/proteinfer
mattoslmp/Proteus-pytorch
mattoslmp/quiet-star
Code for Quiet-STaR
mattoslmp/rodeo2
This isn't our first RODEO. The new and improved RODEO is written in Python and supports lasso peptide, class I lanthipeptide, sactipeptide and thiopeptide precursor prediction.
mattoslmp/taxonomy_ranks
To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)
mattoslmp/tfboot
R package for bootstrapping motifbreakR results