mattoslmp
Computational and Systems Biologist PhD from Fiocruz, Brazil - RJ
Computational and System BiologistBrazil
Pinned Repositories
16S-ITGDB
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
add-tax-pred_metagenome_contrib_Picrust2
AgenticAGI
Advanced Strawberry Logic for All LLMs
AgentLite
annie
annie = ANNotation Information Extractor
Annotation-genome-graphics
R scripts for genome annotation graphs
Cancer-transcriptomics
mattoslmp.github.io
Microbiota-MetaAnalyser
Microbiota Coral 16S MetaAnalyser
primrose
Predict 5mC in PacBio HiFi reads
mattoslmp's Repositories
mattoslmp/Annotation-genome-graphics
R scripts for genome annotation graphs
mattoslmp/Cancer-transcriptomics
mattoslmp/mattoslmp.github.io
mattoslmp/Microbiota-MetaAnalyser
Microbiota Coral 16S MetaAnalyser
mattoslmp/AgenticAGI
Advanced Strawberry Logic for All LLMs
mattoslmp/applied-ml
📚 Papers & tech blogs by companies sharing their work on data science & machine learning in production.
mattoslmp/CameraTraps
PyTorch Wildlife: a Collaborative Deep Learning Framework for Conservation.
mattoslmp/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
mattoslmp/esm-variants
mattoslmp/ESP
mattoslmp/eureka-ml-insights
A framework for standardizing evaluations of large foundation models, beyond single-score reporting and rankings.
mattoslmp/evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
mattoslmp/FaithEval
mattoslmp/flux-fine-tuner
Cog wrapper for ostris/ai-toolkit + post-finetuning cog inference for flux models
mattoslmp/g1
g1: Using Llama-3.1 70b on Groq to create o1-like reasoning chains
mattoslmp/GECKO
Toolbox for including enzyme constraints on a genome-scale model.
mattoslmp/GeneClusterMinerX
mattoslmp/GeneGrouper
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
mattoslmp/gorilla
Gorilla: Training and Evaluating LLMs for Function Calls (Tool Calls)
mattoslmp/gradio
Build and share delightful machine learning apps, all in Python. 🌟 Star to support our work!
mattoslmp/kan-network
A comprehensive collection of KAN(Kolmogorov-Arnold Network)-related resources, including libraries, projects, tutorials, papers, and more, for researchers and developers in the Kolmogorov-Arnold Network field.
mattoslmp/LLM-Research-Scripts
mattoslmp/openai-cookbook
Examples and guides for using the OpenAI API
mattoslmp/OpenHands
🙌 OpenHands: Code Less, Make More
mattoslmp/paper-qa
High accuracy RAG for answering questions from scientific documents with citations
mattoslmp/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
mattoslmp/proteinfer
mattoslmp/rodeo2
This isn't our first RODEO. The new and improved RODEO is written in Python and supports lasso peptide, class I lanthipeptide, sactipeptide and thiopeptide precursor prediction.
mattoslmp/taxonomy_ranks
To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)
mattoslmp/thinkR
gpt-o1 like chain of thoughts with local LLMs in R