mattoslmp
Computational and Systems Biologist PhD from Fiocruz, Brazil - RJ
Computational and System BiologistBrazil
Pinned Repositories
16S-ITGDB
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
add-tax-pred_metagenome_contrib_Picrust2
AgenticAGI
Advanced Strawberry Logic for All LLMs
AgentLite
annie
annie = ANNotation Information Extractor
Annotation-genome-graphics
R scripts for genome annotation graphs
Cancer-transcriptomics
mattoslmp.github.io
Microbiota-MetaAnalyser
Microbiota Coral 16S MetaAnalyser
primrose
Predict 5mC in PacBio HiFi reads
mattoslmp's Repositories
mattoslmp/AgentLite
mattoslmp/alphafold
Open source code for AlphaFold.
mattoslmp/Aminoacid-cost-of-protein
genomic analysis
mattoslmp/awesome-AI-based-protein-design
A collection of research papers for AI-based protein design
mattoslmp/bigslice
A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
mattoslmp/BioAutoMATED
Automated machine learning for analyzing, interpreting, and designing biological sequences
mattoslmp/ConPLex_dev
mattoslmp/deept2
DeepT2 utilizes deep learning techniques to identify type II polyketide (T2PK) synthases KSβ and their corresponding T2PK product within bacterial genomes. The method leverages ESM2 to transform KSβ sequences into embeddings, which are employed to train two separate classifiers using multi-layer perceptron for both KSβ and T2PKs classification.
mattoslmp/druggpt
DrugGPT: A GPT-based Strategy for Designing Potential Ligands Targeting Specific Proteins
mattoslmp/exbert
A Visual Analysis Tool to Explore Learned Representations in Transformers Models
mattoslmp/FasterTransformer
Transformer related optimization, including BERT, GPT
mattoslmp/Geospatial_Foundation_Models
mattoslmp/GPT_protein_design
Efficient protein de novo design pipeline with GPT-based generator and transfer learning-based discrminator
mattoslmp/helm-gpt
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer
mattoslmp/HGTector
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
mattoslmp/kaiju2-data-parser
mattoslmp/MJPythonNotebooks
Visualizing gene tree conflict using Phyparts, and ETE3
mattoslmp/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
mattoslmp/NeuralPLexer
NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
mattoslmp/pb-metagenomics-tools
pb-metagenomics-tools
mattoslmp/ProstT5
Bilingual Language Model for Protein Sequence and Structure
mattoslmp/protein-sequence-models
mattoslmp/protein_scoring
Generating and scoring novel enzyme sequences with a variety of models and metrics
mattoslmp/Proteus-pytorch
mattoslmp/ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
mattoslmp/quiet-star
Code for Quiet-STaR
mattoslmp/RFdiffusion
Code for running RFdiffusion
mattoslmp/start-llms
A complete guide to start and improve your LLM skills in 2023 with little background in the field and stay up-to-date with the latest news and state-of-the-art techniques!
mattoslmp/stockbot-on-groq
StockBot powered by Groq: Lightning Fast AI Chatbot that Responds With Live Interactive Stock Charts, Financials, News, Screeners, and More. Powered by Llama3-70b on Groq, Vercel AI SDK, and TradingView Widgets.
mattoslmp/tfboot
R package for bootstrapping motifbreakR results