mattoslmp
Computational and Systems Biologist PhD from Fiocruz, Brazil - RJ
Computational and System BiologistBrazil
Pinned Repositories
16S-ITGDB
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
add-tax-pred_metagenome_contrib_Picrust2
AgentLite
AHRD
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
annie
annie = ANNotation Information Extractor
Annotation-genome-graphics
R scripts for genome annotation graphs
Cancer-transcriptomics
mattoslmp.github.io
Microbiota-MetaAnalyser
Microbiota Coral 16S MetaAnalyser
primrose
Predict 5mC in PacBio HiFi reads
mattoslmp's Repositories
mattoslmp/primrose
Predict 5mC in PacBio HiFi reads
mattoslmp/add-tax-pred_metagenome_contrib_Picrust2
mattoslmp/alphafold
Open source code for AlphaFold.
mattoslmp/bgcpred
BGC class abudance training and prediction
mattoslmp/BiG-SCAPE
Similarity networks of biosynthetic gene clusters
mattoslmp/bigslice
A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
mattoslmp/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
mattoslmp/ColabFold
Making Protein folding accessible to all!
mattoslmp/CoverM
Read coverage calculator for metagenomics
mattoslmp/DBSCAN-SWA
mattoslmp/DEPhT
Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
mattoslmp/emapper2gbk
Convert GFF, fastas, annotation table and species name into Genbank.
mattoslmp/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
mattoslmp/ESP
mattoslmp/FNP_aux_scripts
Small scripts to help with fungal biosynthetic gene cluster mining
mattoslmp/GECKO
Toolbox for including enzyme constraints on a genome-scale model.
mattoslmp/graftM
GraftM - Rapid community profiles from metagenomes
mattoslmp/Integron_Finder
Bioinformatics tool to find integrons in bacterial genomes
mattoslmp/localcolabfold
ColabFold on your local PC
mattoslmp/MassBank-data
Official repository of open data MassBank records
mattoslmp/multiGenomicContext
multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
mattoslmp/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
mattoslmp/nplinker
mattoslmp/pb-CpG-tools
Collection of tools for the analysis of CpG data
mattoslmp/pb-metagenomics-tools
pb-metagenomics-tools
mattoslmp/protein-sequence-models
mattoslmp/proteinfer
mattoslmp/pubchem-finder
Tool for finding similar chemical compounds based on their smiles representation
mattoslmp/taxonomizr
Parse NCBI taxonomy and accessions to find taxonomic assignments
mattoslmp/taxonomy_ranks
To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)