mattoslmp
Computational and Systems Biologist PhD from Fiocruz, Brazil - RJ
Computational and System BiologistBrazil
Pinned Repositories
16S-ITGDB
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
add-tax-pred_metagenome_contrib_Picrust2
AgenticAGI
Advanced Strawberry Logic for All LLMs
AgentLite
annie
annie = ANNotation Information Extractor
Annotation-genome-graphics
R scripts for genome annotation graphs
Cancer-transcriptomics
mattoslmp.github.io
Microbiota-MetaAnalyser
Microbiota Coral 16S MetaAnalyser
primrose
Predict 5mC in PacBio HiFi reads
mattoslmp's Repositories
mattoslmp/16S-ITGDB
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
mattoslmp/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
mattoslmp/aop-ontology
Adverse Outcome Pathway Ontology
mattoslmp/BioData
All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
mattoslmp/carveme
CarveMe: genome-scale metabolic model reconstruction
mattoslmp/chemspiderapi
R functionalites for ChemSpider's new API services
mattoslmp/corason
Bioinformatic Tools for study Evolution of metabolic diversity
mattoslmp/DNAModAnnot
R toolbox for DNA Modifications filtering and annotation
mattoslmp/EDirectCookbook
mattoslmp/embeddings_reproduction
mattoslmp/entrez_qiime
A utility to generate input files for taxonomy assignment in QIIME from the NCBI database
mattoslmp/eToxPred
A simple tool to predict the general toxicity and calculate the synthesize accessibility (SA) score for small molecules.
mattoslmp/evomining
mattoslmp/ISDB
A database of In-Silico predicted MS/MS spectrum of Natural Products
mattoslmp/iSNV-calling
Bioinformatics pipeline for intrahost single nucleotide variation (iSNV) calling from viral genome deep sequencing data.
mattoslmp/kofam_scan
CLI tool to annotate genes with KOfam
mattoslmp/meta-proteome-analyzer
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
mattoslmp/METACLUSTER
R package for context-specific functionality analysis of metabolic gene clusters
mattoslmp/MetaG_Pipeline
Suen Lab Metagenomic Analysis Pipeline
mattoslmp/metagMisc
Miscellaneous functions for metagenomic analysis.
mattoslmp/metscale
MetScale: snakemake workflows to scale metagenome analyses
mattoslmp/Misc_Code
Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks
mattoslmp/multiPhATE
Throughput PhATE processing of draft or finished phage genomes
mattoslmp/OTU-table-to-bubble-plot
R script to create from OTU/ASV tables nice bubble plots for your scientific publications
mattoslmp/QKdomain
A set of scripts that can be used for domain analysis.
mattoslmp/RBseq
Track fitness of deletion mutants with a randomly barcoded random insertion library
mattoslmp/resources
A Highly Opinionated List of Open Source Cheminformatics Resources
mattoslmp/RNAseq_nonmodel
mattoslmp/SeqVec
Modelling the Language of Life - Deep Learning Protein Sequences
mattoslmp/taxdump_edit
:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files