Pinned Repositories
2017-05-18-snakemake
AnshulTutorial
ase_read_counting_workflow
Snakemake workflow for removing mapping bias from sequencing data, and then counting the number of reads per allele at loci of interest.
dnaseq_variant_calling_workflow
ISPeaks
Peak caller for insertion sequences within metagenomic samples.
mustache
A flexible tool to identify mobile genetic elements and their sites of insertions from short-read whole-genome sequencing data.
pytidyverse
A simple python wrapper to easily import packages that were designed to syntactically mimic the R tidyverse
readpy
A simple python package designed to syntactically mimic the readr R package.
rnaseq_variant_calling_workflow
This is an human RNAseq variant calling workflow, following the GATK pipeline. Also includes ADAR-site elimination.
tidypython
tidypython - A simple python package designed to syntactically mimic the tidyr package in R.
durrantmm's Repositories
durrantmm/tidypython
tidypython - A simple python package designed to syntactically mimic the tidyr package in R.
durrantmm/rnaseq_variant_calling_workflow
This is an human RNAseq variant calling workflow, following the GATK pipeline. Also includes ADAR-site elimination.
durrantmm/mustache
A flexible tool to identify mobile genetic elements and their sites of insertions from short-read whole-genome sequencing data.
durrantmm/dnaseq_variant_calling_workflow
durrantmm/ISPeaks
Peak caller for insertion sequences within metagenomic samples.
durrantmm/pytidyverse
A simple python wrapper to easily import packages that were designed to syntactically mimic the R tidyverse
durrantmm/readpy
A simple python package designed to syntactically mimic the readr R package.
durrantmm/2017-05-18-snakemake
durrantmm/AnshulTutorial
durrantmm/ase_read_counting_workflow
Snakemake workflow for removing mapping bias from sequencing data, and then counting the number of reads per allele at loci of interest.
durrantmm/ASETools
durrantmm/bhattlab
This is the code that I developed in the bhatt lab
durrantmm/dada2_snakemake
durrantmm/dplython
dplyr for python
durrantmm/durrantmm.github.io
Matt Durrant's Personal Website
durrantmm/durratools
durrantmm/eagle
Detect environment effects on ASE
durrantmm/eagle2
durrantmm/gatk-rnaseq-variant-calling-workflow
durrantmm/genomic_ase_read_counting_workflow
durrantmm/ISHunter
durrantmm/metaseqml
Classification of sequencing reads
durrantmm/mustache2
durrantmm/mustache_OLD
durrantmm/pipelines
Data processing and analysis pipelines
durrantmm/PPI_RandomForest_Prediction
This repository houses the majority of the resources used for Matt Durrant's 2016 Fall semester project. The focus of this project was to create a random forest machine learning model to predict protein-protein interactions.
durrantmm/Project2_Assembler
Our second project github repository
durrantmm/shiny-omics
durrantmm/VariantManager
A software suite and web plugin to manage variants for various human genomic projects.