yazhinia

Computational Biologist

Max Planck Institute for Biophysical ChemistryGoettingen, Germany

Pinned Repositories

DeepDPM
"DeepDPM: Deep Clustering With An Unknown Number of Clusters" [Ronen, Finder, and Freifeld, CVPR 2022]
Language:Python773 9 6076
instant-distance
Fast approximate nearest neighbor searching in Rust, based on HNSW index
Language:Rust313 7 728
strobealign
Aligns short reads using dynamic seed size with strobemers
Language:C++150 10 17417
hnswlib
Header-only C++/python library for fast approximate nearest neighbors
Language:C++4.4k 65 375654
binning_benchmarking
Language:Jupyter Notebook00
McDevol
Language:Python00
leidenalg
Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.
Language:Python621 14 13878
aligner2counts
Language:C++0 1 00
convertfasta
Convert multi line fasta format to single line format
Language:C++0 1 00
spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
Language:C0 0 00

yazhinia's Repositories

yazhinia/aligner2counts
Language:C++0 1 00
yazhinia/convertfasta
Convert multi line fasta format to single line format
Language:C++0 1 00
yazhinia/spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
Language:C0 0 00