chlazaris
I am a Senior Expert I in Oncology Data Science at Novartis BioMedical Research
Novartis BioMedical ResearchCambridge, MA
chlazaris's Stars
crazyhottommy/data-science-at-the-command-line
Data Science at the Command Line
jeroenjanssens/data-science-at-the-command-line
Data Science at the Command Line
shenwei356/brename
A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression
AlexsLemonade/training-modules
A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
jokergoo/ComplexHeatmap
Make Complex Heatmaps
ncbi/TPMCalculator
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
kevinblighe/PCAtools
PCAtools: everything Principal Components Analysis
AAlhendi1707/countToFPKM
Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
higlass/higlass
Fast, flexible and extensible genome browser.
4dn-dcic/4dn-policies
Policies for the NIH Common Fund 4D Nucleome Network.
cBioPortal/2020-cbioportal-r-workshop
Workshop materials for cBioPortal Webinar 5: API & R Client
zhxiaokang/RASflow
RNA-Seq analysis workflow
simonvh/fluff
Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.
linlabcode/CRC
nasqar/ClusterProfShinyORA
A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
zhongw2/GeneTEFlow
nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
vanheeringen-lab/genomepy
genes and genomes at your fingertips
hms-dbmi/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
harelba/q
q - Run SQL directly on delimited files and multi-file sqlite databases
stevekm/annotate-peaks
Scripts for .bed file genomic region annotation with various tools
lconde-ucl/DGE
Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
crickbabs/rnaSeq_byBABS
Nextflow RNA-Seq Analysis Pipeline
nextflow-io/awesome-nextflow
A curated list of nextflow based pipelines
slowkow/snakefiles
:snake: Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
crazyhottommy/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
anishathalye/gemini
Gemini is a modern LaTex beamerposter theme 🖼
ajitjohnson/arseq
An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)
brentthorne/posterdown
Use RMarkdown to generate PDF Conference Posters via HTML
kidzik/stanford-beamer
Unofficial Stanford's beamer theme (template) LaTeX