Pinned Repositories
benchmark
chloroExtractor
fast-plast_docker
A docker solution for Fast-Plast (https://github.com/mrmckain/Fast-Plast)
fastq-shuffle
A shuffle program for FASTQ files
GetOrganelle_docker
A docker solution for GetOrganelle (https://github.com/Kinggerm/GetOrganelle)
IOGA_docker
A docker solution for IOGA (https://github.com/holmrenser/IOGA)
NOVOPlasty_docker
A docker solution for NOVOPlasty (https://github.com/ndierckx/NOVOPlasty)
ORG.Asm_docker
A docker solution for ORG.Asm (https://git.metabarcoding.org/org-asm/org-asm)
screening_container
This container is used to screen for new chloroplasts
simulate
Protocol to generate simulated sequence reads for evaluation of chloroExtractor
chloroExtractorTeam's Repositories
chloroExtractorTeam/fastq-shuffle
A shuffle program for FASTQ files
chloroExtractorTeam/chloroExtractor
chloroExtractorTeam/benchmark
chloroExtractorTeam/fast-plast_docker
A docker solution for Fast-Plast (https://github.com/mrmckain/Fast-Plast)
chloroExtractorTeam/GetOrganelle_docker
A docker solution for GetOrganelle (https://github.com/Kinggerm/GetOrganelle)
chloroExtractorTeam/IOGA_docker
A docker solution for IOGA (https://github.com/holmrenser/IOGA)
chloroExtractorTeam/NOVOPlasty_docker
A docker solution for NOVOPlasty (https://github.com/ndierckx/NOVOPlasty)
chloroExtractorTeam/ORG.Asm_docker
A docker solution for ORG.Asm (https://git.metabarcoding.org/org-asm/org-asm)
chloroExtractorTeam/screening_container
This container is used to screen for new chloroplasts
chloroExtractorTeam/simulate
Protocol to generate simulated sequence reads for evaluation of chloroExtractor
chloroExtractorTeam/annoBTD
Annotation software for Verdant.
chloroExtractorTeam/bats
Bash Automated Testing System
chloroExtractorTeam/chloroExtractor-dockerbase
Docker base image for our chloroExtractor Docker container
chloroExtractorTeam/chloroExtractor-testsuite
Tests for our chloroExtractor
chloroExtractorTeam/chloroExtractorLogo
All stuff concerning the logo of our chloroExtractor
chloroExtractorTeam/chloroplast_landscape
Chloroplast landscape for different plant species
chloroExtractorTeam/docker
Build scripts for docker images to run chloroExtractor
chloroExtractorTeam/fastg-parser
Parses the FastG files and extracts target assemblies