chmreid
Bioinformatics Programmer, formerly @ UCSC Genomics Institute (left 5/22). Cloud security, bioinformatics workflows, containerization, AWS. Also @charlesreid1
UCSC Genomics InstituteSanta Cruz, CA
Pinned Repositories
2020-automated-incident-response-with-ssm
2020-csp-report-lambda-cloudwatch
CloudFormation template to create API Gateway + Lambda to send CSP reports to CloudWatch logs.
2020-data-store
AWS and GCP data storage system for genomic data.
2020-dockstore-pod-nginx-test
A docker pod for testing nginx configuration options. Configuration attempts to replicate the Dockstore web app setup.
2020-falco-cloudwatch-cloudformation
CloudFormation template for creating an EC2 in its own VPC, installing Falco (intrusion detection program), and sending Falco logs to CloudWatch.
2020-openvpn-cloudformation
A CloudFormation template to deploy an OpenVPN server in its own separate AWS VPC.
2020-openvpn-mfa-google-auth
Instructions for setting up OpenVPN on Ubuntu 18.04 to use MFA via Google Authenticator + PAM
2020-ubuntu-openvpn-aws-cloudformation
CloudFormation template to deploy OpenVPN as a personal internet proxy in any AWS region
eightball
🎱 A vim plugin to implement custom functionality for black, the opinionated Python code formatter. 🎱
data-store
AWS and GCP data storage system for genomic data.
chmreid's Repositories
chmreid/2020-csp-report-lambda-cloudwatch
CloudFormation template to create API Gateway + Lambda to send CSP reports to CloudWatch logs.
chmreid/eightball
🎱 A vim plugin to implement custom functionality for black, the opinionated Python code formatter. 🎱
chmreid/2020-automated-incident-response-with-ssm
chmreid/2020-data-store
AWS and GCP data storage system for genomic data.
chmreid/2020-dockstore-pod-nginx-test
A docker pod for testing nginx configuration options. Configuration attempts to replicate the Dockstore web app setup.
chmreid/2020-falco-cloudwatch-cloudformation
CloudFormation template for creating an EC2 in its own VPC, installing Falco (intrusion detection program), and sending Falco logs to CloudWatch.
chmreid/2020-openvpn-cloudformation
A CloudFormation template to deploy an OpenVPN server in its own separate AWS VPC.
chmreid/2020-openvpn-mfa-google-auth
Instructions for setting up OpenVPN on Ubuntu 18.04 to use MFA via Google Authenticator + PAM
chmreid/2020-ubuntu-openvpn-aws-cloudformation
CloudFormation template to deploy OpenVPN as a personal internet proxy in any AWS region
chmreid/2020-ubuntu-securityonion-openvpn
Guide to setting up a SecurityOnion IDS server that receives a copy of traffic to and from a monitored machine over an OpenVPN connection.
chmreid/2022-cloudformation-transclusion-pattern
This repo demonstrates the transclusion pattern for keeping lambda function code separate from CloudFormation templates.
chmreid/2022-django-DefectDojo-github-oauth
Fork of DefectDojo attempting to implement GitHub OAuth and authorization via GitHub teams. (Unsuccessful.)
chmreid/2022-multiple-github-identities
Memo capturing how and why to use multiple Github identities.
chmreid/bcc2020-training
Training materials for our BCC 2020 training workshop.
chmreid/block-s3-buckets-cloudformation-custom-resource
A CloudFormation custom resource for blocking the creation of public S3 buckets
chmreid/Cecret
Nextflow workflow for our analysis of SARS-COV-2
chmreid/centillion
main repository: https://github.com/dcppc/centillion
chmreid/dockstore-whalesay-wdl-only
Sample dockstore whalesay repo for testing
chmreid/fake-tool
This is a fake Dockstore tool.
chmreid/ghcr-workflow
chmreid/mac-dotfiles
dotfiles for mac machines
chmreid/wazuh-cloudformation
Wazuh template and scripts for cloudformation