No error but getting no plot
zillurbmb51 opened this issue · 3 comments
prs_scz_bmi_maf_0.05_beta.log
Hi,
I ran PRSice without any error. At the end it shows "Begin plotting``\n" Current Rscript version = 2.3.3
I have downloaded the latest code from this github page. Should not it be 2.3.5?
The point is it generates no plot. Even I added the --plot argument but still same. No plot. How could I plot the results? Attached is the log file. I am using HPC environment but it should not be an issue because other Rscripts that create plots, they work perfectly without any issue. Any help?
No plot will be generated if you use --no-regress as we cannot plot the performance of regression model that was not performed
Hi,
I have written the following codes to run PRSice-2. It run without any error but it doesn't create any plot, it only creates three files EUR.prsice, EUR.best and EUR.all_score.
PRSice --base Height.QC.gz --base-info INFO:0.8 --base-maf MAF:0.01 --target EUR.QC --pheno EUR.height --cov EUR.covariate --stat OR --or --out EUR --pvalue P --bar-levels 0.001,0.05,0.1,0.2,0.3,0.4,0.5 --binary-target F.
I am using the HPC environment through Mobaxterm. Please help.
Have answered the question in another issue.