choishingwan/PRSice

Issues

• Error: Invalid .bed file size for yyy_Chr2.QC.bed.

  #363 opened 24 days ago by acca1562
  3

• Error: Invalid .bed file size for yyy_Chr2.QC.bed

  #362 opened 24 days ago by acca1562
  0

• About the covariate file

  #361 opened a month ago by acca1562
  4

• Error when inputing bgen files

  #354 opened 2 months ago by chenpunk
  5

• [support] replicable result on inidvidual level

  #357 opened 4 months ago by Shawndockercool
  1

• Generating polygenic scores without a target data phenotype

  #358 opened 2 months ago by JessG1981
  1

• PRSice MAF and Filtering Step Slow

  #360 opened 2 months ago by zhanglucas
  1

• [Suggestions] support for pfile

  #359 opened 2 months ago by chenyangjjj
  1

• Issue with PRSice-v2 output

  #356 opened 4 months ago by JessG1981
  3

• Terminate called after throwing an instance of 'std::runtime_error'

  #355 opened 4 months ago by ahasuni
  0

• Error: Invalid .bed file size for .bed

  #353 opened 6 months ago by zfchen1
  4

• Error: No valid variant remaining

  #352 opened 6 months ago by Shrishtee-kandoi
  6

• Empty Valid SNP ID

  #351 opened 7 months ago by science987
  0

• No error but getting no plot

  #327 opened 7 months ago by zillurbmb51
  3

• Set-based Clumping

  #347 opened 7 months ago by JinhanZhu1
  1

• Trying to run PRSice on files received by a collaborator but BGEN file is not being opened

  #348 opened 10 months ago by varsh19
  1

• INFO commands

  #349 opened 8 months ago by JihyunKiminGithub
  1

• how to combine PRS from each chromosomes？

  #346 opened 7 months ago by hxckk
  15

• Issue with the output files (.summary and .prsice files)

  #350 opened 7 months ago by WeiChenPan
  1

• Reduce time

  #345 opened a year ago by SoumenMaity922
  2

• PRSet Background file

  #339 opened a year ago by JinhanZhu1
  4

• scores

  #342 opened a year ago by mfazel
  1

• Error can't open base file

  #344 opened a year ago by youniwerse
  2

• Unrecognized Option

  #343 opened a year ago by SoumenMaity922
  4

• All the variants are excluded, No valid variants

  #340 opened a year ago by msarguru
  2

• [BUG]std::runtime_error when clumping

  #341 opened a year ago by jraikist
  1

• Customize Base Dataset

  #336 opened a year ago by JinhanZhu1
  3

• [BUG] `sys/sysctl.h` is deprecated in glibc-2.3.2

  #338 opened a year ago by espenhgn
  2

• Issue with covariate-file

  #337 opened a year ago by LarsOstman
  6

• [Help Wanted]

  #335 opened a year ago by paulosaquilayan
  0

• Unable to remove duplicated SNP with --extract PRSice.valid

  #333 opened a year ago by sakuramodokich
  1

• [BUG]no error but .best and .summary file come out to be NULL data.frame

  #334 opened a year ago by yc-long
  0

• Issue with plotting: Graphics API version mismatch

  #332 opened a year ago by sakuramodokich
  0

• No error but getting no results

  #331 opened a year ago by sakuramodokich
  4

• Terminate Runtime Error

  #330 opened a year ago by michellekee
  0

• How to use PRSice without a p-value (e.g data from PGSCatalog)

  #323 opened a year ago by frankMusacchia
  2

• SNPs with extremely low P-value

  #320 opened a year ago by Apprentice2
  2

• Is PRS.R2=Full.R2-Null.R2 correct?

  #321 opened a year ago by Apprentice2
  2

• Why computing the R2 between the trait and the PRS is different from PRSIce results?

  #324 opened a year ago by Antonio-Nappi
  5

• Error: ZSTD compression currently unsupported

  #326 opened a year ago by sakuramodokich
  6

• Too many variants with mismatch information

  #328 opened a year ago by sakuramodokich
  4

• Too many variants with mismatch information

  #329 opened a year ago by sakuramodokich
  0

• Trying to run PRSice with Age and Sex as covariates but I get the error "ERROR: All samples removed due to missingness in covariates file"

  #325 opened a year ago by varsh19
  2

• Why PRSice-2 tries to install again './lib'?

  #322 opened a year ago by Antonio-Nappi
  1

• Harmonisation and strand flip by PRSice

  #318 opened a year ago by jianvhuang
  2

• See here related to support

  #319 opened a year ago by choishingwan
  0

• it is likely that your base and target data has different encoding for SNPs. You will need to check that.

  #314 opened a year ago by theclairecamp
  1

• Num_SNP matches snps in .snp file

  #316 opened a year ago by dorks81
  1

• Phenotype data

  #317 opened a year ago by RafaFariasVarona
  1

• Error: Invalid chromosome number for SNP

  #315 opened a year ago by PyunJung-Min
  0