choishingwan/PRSice
A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
CGPL-3.0
Pinned issues
Issues
- 3
Error: Invalid .bed file size for yyy_Chr2.QC.bed.
#363 opened by acca1562 - 0
Error: Invalid .bed file size for yyy_Chr2.QC.bed
#362 opened by acca1562 - 4
About the covariate file
#361 opened by acca1562 - 5
Error when inputing bgen files
#354 opened by chenpunk - 1
- 1
- 1
PRSice MAF and Filtering Step Slow
#360 opened by zhanglucas - 1
[Suggestions] support for pfile
#359 opened by chenyangjjj - 3
Issue with PRSice-v2 output
#356 opened by JessG1981 - 0
- 4
Error: Invalid .bed file size for .bed
#353 opened by zfchen1 - 6
Error: No valid variant remaining
#352 opened by Shrishtee-kandoi - 0
Empty Valid SNP ID
#351 opened by science987 - 3
No error but getting no plot
#327 opened by zillurbmb51 - 1
Set-based Clumping
#347 opened by JinhanZhu1 - 1
Trying to run PRSice on files received by a collaborator but BGEN file is not being opened
#348 opened by varsh19 - 1
INFO commands
#349 opened by JihyunKiminGithub - 15
how to combine PRS from each chromosomes?
#346 opened by hxckk - 1
- 2
Reduce time
#345 opened by SoumenMaity922 - 4
PRSet Background file
#339 opened by JinhanZhu1 - 1
- 2
Error can't open base file
#344 opened by youniwerse - 4
Unrecognized Option
#343 opened by SoumenMaity922 - 2
All the variants are excluded, No valid variants
#340 opened by msarguru - 1
[BUG]std::runtime_error when clumping
#341 opened by jraikist - 3
Customize Base Dataset
#336 opened by JinhanZhu1 - 2
[BUG] `sys/sysctl.h` is deprecated in glibc-2.3.2
#338 opened by espenhgn - 6
Issue with covariate-file
#337 opened by LarsOstman - 0
[Help Wanted]
#335 opened by paulosaquilayan - 1
- 0
- 0
- 4
No error but getting no results
#331 opened by sakuramodokich - 0
Terminate Runtime Error
#330 opened by michellekee - 2
- 2
SNPs with extremely low P-value
#320 opened by Apprentice2 - 2
Is PRS.R2=Full.R2-Null.R2 correct?
#321 opened by Apprentice2 - 5
Why computing the R2 between the trait and the PRS is different from PRSIce results?
#324 opened by Antonio-Nappi - 6
Error: ZSTD compression currently unsupported
#326 opened by sakuramodokich - 4
Too many variants with mismatch information
#328 opened by sakuramodokich - 0
Too many variants with mismatch information
#329 opened by sakuramodokich - 2
Trying to run PRSice with Age and Sex as covariates but I get the error "ERROR: All samples removed due to missingness in covariates file"
#325 opened by varsh19 - 1
Why PRSice-2 tries to install again './lib'?
#322 opened by Antonio-Nappi - 2
Harmonisation and strand flip by PRSice
#318 opened by jianvhuang - 0
See here related to support
#319 opened by choishingwan - 1
it is likely that your base and target data has different encoding for SNPs. You will need to check that.
#314 opened by theclairecamp - 1
Num_SNP matches snps in .snp file
#316 opened by dorks81 - 1
Phenotype data
#317 opened by RafaFariasVarona - 0
Error: Invalid chromosome number for SNP
#315 opened by PyunJung-Min