Pinned Repositories
16S-rRNA-microbiome
This contains code to import a Phyloseq object and conduct analyses on data diagnostics, filtering and transformation, relative abundance, diversity metrics (Shannon, richness), Bray-curtic PCoA, DeSeq2 Differential Abundance.
miMediation
R package to perform phylogeny-based mediation test for microbiome data.
choon-sim's Repositories
choon-sim/16S-rRNA-microbiome
This contains code to import a Phyloseq object and conduct analyses on data diagnostics, filtering and transformation, relative abundance, diversity metrics (Shannon, richness), Bray-curtic PCoA, DeSeq2 Differential Abundance.