coloc.abf
MoMaz123 opened this issue · 1 comments
MoMaz123 commented
Hi I am running this:
result <- coloc.abf(dataset1=list(pvalues=input$pval_nominalgwas, type="cc", S=0.33, N=5985),
dataset2=list(pvalues=input$pval_nominal_eqtl, type="quant",N=7119),
MAF=input$maf)
keep having this issues.
result <- coloc.abf(dataset1=list(pvalues=input$pval_nominalgwas, type="cc", S=0.33, N=5985),
-
dataset2=list(pvalues=input$pval_nominal_eqtl, type="quant",N=7119),MAF=input$maf)
Error in check_dataset(d = dataset1, 1) :
dataset 1: missing required element(s) snp
Your advise is appreciated.
chr1swallace commented
Each dataset needs a snp identifier. Yours doesn't have one.
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Subject: [chr1swallace/coloc] coloc.abf (Issue #131)
Hi I am running this:
result <- coloc.abf(dataset1=list(pvalues=input$pval_nominalgwas, type="cc", S=0.33, N=5985),
dataset2=list(pvalues=input$pval_nominal_eqtl, type="quant",N=7119),
MAF=input$maf)
keep having this issues.
result <- coloc.abf(dataset1=list(pvalues=input$pval_nominalgwas, type="cc", S=0.33, N=5985),
*
dataset2=list(pvalues=input$pval_nominal_eqtl, type="quant",N=7119),MAF=input$maf)
Error in check_dataset(d = dataset1, 1) :
dataset 1: missing required element(s) snp
Your advise is appreciated.
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