"cc" and "quant" variables effect size
ariadnacilleros opened this issue · 2 comments
ariadnacilleros commented
Hi,
I have been reading some of the issues and I am pretty sure that I know the answer, but just in case I would like to confirm it. When we have a case-control GWAS, thus type = "cc", shall we set beta = log(OR) or beta = OR?
Thank you so much!
Best,
Ariadna
chr1swallace commented
Beta is log OR
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Subject: [chr1swallace/coloc] "cc" and "quant" variables effect size (Issue #149)
Hi,
I have been reading some of the issues and I am pretty sure that I know the answer, but just in case I would like to confirm it. When we have a case-control GWAS, thus type = "cc", shall we set beta = log(OR) or beta = OR?
Thank you so much!
Best,
Ariadna
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ariadnacilleros commented
Got it! Thank you so much for the quick answer and the package.
Best,
Ariadna