PP.H4 results for coloc.susie()

[JFF1594032292]

Hi,
I'm reading the documentation of coloc5 https://chr1swallace.github.io/coloc/articles/a06_SuSiE.html for using the coloc.susie(). But I noticed the susie.res$summary only report the PP.H4.abf rather than PP.H4, which given by coloc.abf() previously.

I read some papers which using coloc, and they usually defined confident colocalization with PPH4. Though the posterior probability can be calculated with Bayes factors, I also wonder if there direct way to get PP.H4 from the results?
Thanks,
Jiang

[chr1swallace]

That's just my inconsistency in naming. Both column names mean the same. https://chr1swallace.github.io

…

________________________________ From: JFF ***@***.***> Sent: Tuesday, November 9, 2021 2:18:31 PM To: chr1swallace/coloc ***@***.***> Cc: Subscribed ***@***.***> Subject: [chr1swallace/coloc] PP.H4 results for coloc.susie() (Issue #61) Hi, I'm reading the documentation of coloc5 https://chr1swallace.github.io/coloc/articles/a06_SuSiE.html<url> for using the coloc.susie(). But I noticed the susie.res$summary only report the PP.H4.abf rather than PP.H4, which given by coloc.abf() previously. [image]<https://user-images.githubusercontent.com/49577864/140938680-1ddd3210-cdd5-4e26-a7fc-fd734fe61388.png> I read some papers which using coloc, and they usually defined confident colocalization with PPH4. Though the posterior probability can be calculated with Bayes factors, I also wonder if there direct way to get PP.H4 from the results? Thanks, Jiang — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#61>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AAQWR2EGDG6ZD7KLNEHPGNTULEUTPANCNFSM5HVNEFWQ>. Triage notifications on the go with GitHub Mobile for iOS<https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android<https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[JFF1594032292]

That's helped , thanks!