chr1swallace
Statisitician using genomics to understand immune-mediated diseases. Github hosts mainly R packages to do statistical analysis of genetic data.
University of CambridgeCambridge, UK
Pinned Repositories
annotSnpStats
repo for R package annotSnpStats
coloc
Repo for the R package coloc
coloc-priors-mask-paper
coloc-susie-paper
finemap-psa
simple fine mapping script in R used as the basis for analyses in Bowes et. al (2015), Dense genotyping of immune-related susceptibility loci reveals new insights into the genetics of psoriatic arthritis.
GUESSFM
R package for fine mapping genetic associations in imputed GWAS data.
ibd-ets2-analysis
random-functions
R functions for which I want some version control
simGWAS
Simulating the expected output from a GWAS with a given causal model.
snpStatsWriter
Repo for the R package snpStatsWriter
chr1swallace's Repositories
chr1swallace/caller
cluster beta/gaussian mixture data
chr1swallace/condpp
R code used to explore appropriate p value thresholds for calling genetic association in one disease given genomewide significant genetic association at the same SNP in a related disease in the T1D ImmunoChip paper (Onengut et al, in press)
chr1swallace/devtools
Tools to make an R developer's life easier
chr1swallace/origin
Repo for the R package origin
chr1swallace/random-latex
Odd bits of LaTeX code
chr1swallace/snpBMA
R functions to extend the CRAN BMA library to deal with dense genotyping data. NOT YET WORKING!!!!
chr1swallace/talk-outline
chr1swallace/VCF_projects
chr1swallace/wgsea
Repo for the R package wgsea