Pinned Repositories
AR_Bank_scripts
batch_MLST_of_species
c-SSTAR
CLI Sequence Search Tool for Antimicrobial Resistance
De-MetaST-BLAST
genomics_scripts
mer-freq
phylogenetics_scripts
see_SNP_neighborhoods
visualize read pileup neighborhoods of genomic and pairwise SNPs
SPANDx
SPANDx - Comparative genomics for next-generation haploid sequence data
summarize_kraken_data
scripts to summarize output from Kraken, the taxonomic sequence classifier
chrisgulvik's Repositories
chrisgulvik/genomics_scripts
chrisgulvik/c-SSTAR
CLI Sequence Search Tool for Antimicrobial Resistance
chrisgulvik/De-MetaST-BLAST
chrisgulvik/mer-freq
chrisgulvik/phylogenetics_scripts
chrisgulvik/SPANDx
SPANDx - Comparative genomics for next-generation haploid sequence data
chrisgulvik/UnivaGridEngine_UGE_cluster_scripts
primarily wrapper scripts to make use of the computing cluster's UGE scheduler
chrisgulvik/AR_Bank_scripts
chrisgulvik/chewBBACA
BSR-Based Allele Calling Algorithm
chrisgulvik/ClonalFrameML_scripts
scripts for inferring recombination sites with ClonalFrameML
chrisgulvik/CSIS
Code Safety Inspection Service
chrisgulvik/bg-wf-paired-end-illumina-assembly
pathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data
chrisgulvik/De-MetaST
chrisgulvik/deepvariant
Please consider using/contributing to https://github.com/nf-core/sarek
chrisgulvik/gunc
Python package for detection of chimerism and contamination in prokaryotic genomes.
chrisgulvik/gustle
find exactly matching contigs in a genome
chrisgulvik/minknow_api
Protobuff and gRPC specifications for the MinKNOW API
chrisgulvik/minknow_lims_interface
Protobuff and gRPC specifications for the MinKNOW LIMS Interface
chrisgulvik/naughty-binfie-files
chrisgulvik/pima
Plasmid and antimicrobial resistance pipeline
chrisgulvik/protobuf
Protocol Buffers - Google's data interchange format
chrisgulvik/pyminknow
Mock minKNOW gRPC server
chrisgulvik/read_until_api
Read Until client library for Nanopore Sequencing
chrisgulvik/sars-cov-2-genomic-dashboards
genomic dashboards for visualizing SARS-CoV-2 genomic analyses
chrisgulvik/scripts
misc scripts
chrisgulvik/Vagococcus
chrisgulvik/wf-aai
NextFlow workflow for comparing 2 or more proteomes with Average Amino acid Identity (AAI)
chrisgulvik/wf-ani
NextFlow workflow for comparing 2 or more genomes with Average Nucleotide Identity (ANI)
chrisgulvik/wf-assembly-snps
chrisgulvik/wf-paired-end-illumina-assembly
Trim, assemble, and annotate paired-end Illumina sequences.