Pinned Repositories
AMEB2020_Phylogenomics_demo
docker-intro
A short introduction to using Docker in Bioinformatics
genomisc
The repository contains a set of miscellaneous scripts for working with various kinds of genomics data.
maker-docker
Docker image as base for building full MAKER image
maker2gff_to_sqn
methylkit-docker
MITObim
MITObim - mitochondrial baiting and iterative mapping
MitoFish2tbl
Convert MitoAnnotator (MitoFish) annotation file to NCBI feature table format (*.tbl)
phylogenomics_intro_vertebrata
Phylogenomics tutorial based on BUSCO genes
short-read-processing-and-assembly
A short introduction to processing and assembly of short (Illumina) NGS sequencing data
chrishah's Repositories
chrishah/maker-docker
Docker image as base for building full MAKER image
chrishah/short-read-processing-and-assembly
A short introduction to processing and assembly of short (Illumina) NGS sequencing data
chrishah/phylogenomics_intro_vertebrata
Phylogenomics tutorial based on BUSCO genes
chrishah/docker-intro
A short introduction to using Docker in Bioinformatics
chrishah/post-assembly-intro
chrishah/BioinformaticiansToolbox
Training materials for all things bioinformatics
chrishah/Bioinformatics_cheat_sheets
Recipies for running some common bioinformatics software tools and workflows
chrishah/demogenas
democratizing genome assembly
chrishah/guppy-docker
Ubuntu 20.04 with ONT's Guppy basecaller
chrishah/longstitch-docker
Debian 10 with longstitch scaffolding pipeline
chrishah/phylociraptor
rapid phylogenomic tree calculator
chrishah/AMEB_HPC_demo
chrishah/AMEB_Introduction_to_linux
chrishah/augustus-docker
Ubuntu 18.04 with Augustus and additional required software
chrishah/cdhit-docker
Docker image for running cdhit in Ubuntu 18.04
chrishah/course-test
Some description
chrishah/data_science_test
chrishah/docker-aws
aws cli in ubuntu
chrishah/docker-megahit
Docker image based on Ubuntu 20.04 with megahit assembler
chrishah/fastp-docker
fastp suite in Ubuntu 20.04
chrishah/flye-docker
chrishah/fmlrc-wtdbg2-plus-docker
chrishah/gpubootcamp
This repository consists for gpu bootcamp material for HPC and AI
chrishah/MitoComp
chrishah/qdd-docker
chrishah/R-SARTools-plus-docker
R 4.0.3 setup with SARTools plus necessary dependencies
chrishah/raxml-ng-docker
Ubuntu 22.04 with raxml-ng
chrishah/transdecoder-docker
chrishah/vscode_github_test
chrishah/welldone-docker
A container setup for a docker exercise