christacaggiano
Postdoctoral fellow studying human genetics and bioinformatics at the Institute for Genomic Health at Mt Sinai. Trying my best.
Los Angeles
Pinned Repositories
algorithms
notes for UCSF BMI 203, winter quarter 2018
causal-inference-reading-list
Some papers I've come across on causal inference
celfie
cfDNA cell type of origin estimation
cell-free-dna-reading-list
Important papers relating to the biology of cell free DNA
ecaviar-in-julia
GWAS-EQTL colocalization written in the Julia programming language
ENCODE_WGBS
a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.
IBD
code for analyzing IBD networks
ibd-mapping
Code for IBD mapping in EHR studies of monogenic disease
machine_learning_exercises
Machine learning sample jupyter notebooks
mybaits-probe-design
cfDNA methylation probe design from mybaits targeted sequencing
christacaggiano's Repositories
christacaggiano/celfie
cfDNA cell type of origin estimation
christacaggiano/IBD
code for analyzing IBD networks
christacaggiano/causal-inference-reading-list
Some papers I've come across on causal inference
christacaggiano/exome_processing_pipeline
simple pipeline for processing exome sequencing data using BWA and GATK4
christacaggiano/machine_learning_exercises
Machine learning sample jupyter notebooks
christacaggiano/process-methylation
christacaggiano/ibd-mapping
Code for IBD mapping in EHR studies of monogenic disease
christacaggiano/academic-webpage
jekyll template for simple academic webpage
christacaggiano/als-lasso
christacaggiano/BSBolt
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
christacaggiano/caravaggio
playing around with what a NN can learn about a caravaggio painting
christacaggiano/cfdna-tims
Code for the analysis of tissue informative markers in cfDNA data
christacaggiano/christacaggiano.github.io
my personal website
christacaggiano/differential-methylation
code for calling DMRs in cfdna data
christacaggiano/GATK_exome_seq
christacaggiano/gradient-boosting
christacaggiano/helenberger
Academic Webpage for Helen Berger
christacaggiano/heritability
christacaggiano/Human-hormone-seasonality
Code and data repository for the paper "Hormone seasonality in medical records suggests circannual endocrine circuits" by A. Tendler, A. Bar, N. Mendelsohn-Cohen, O. Karin, Y. Korem Kohanim, L. Maimon, T. Milo, M. Raz, A. Mayo, A. Tanay, U. Alon
christacaggiano/ibd_calling
christacaggiano/intro_to_git
christacaggiano/jupyter_notebook_practice
exercise to practice jupyter notebook
christacaggiano/MethodsTBS
Targeted Bisulfite Sequencing for Biomarker Discovery
christacaggiano/methylation_analysis
Intro to methylation analysis
christacaggiano/misingnoglic.github.io
My website that I finally decided to make
christacaggiano/MultiLabLeaderboard
This is a paper reading tracker app for multiple labs to compare their average reading
christacaggiano/phecode-assoc
christacaggiano/SAIGE
christacaggiano/sbt
SBT_publication
christacaggiano/statistical-rethinking-exercises
Python implementations of the exercises from the "statistical rethinking" textbook