chuanfaliu

SmORFinder

A command line tool to identify and annotate small proteins in microbial sequencing datasets.

macrel

Predict AMPs in (meta)genomes and peptides

1.Manuscript_nature-microbiology_2023

code for manuscript of nature microbiology_2023

CRC_ARG

the supplementary file of Species-level analysis of the human gut microbiome shows antibiotic resistance genes associated with colorectal cancer

Groningen-Microbiome

Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen

Intestinal_TM6SF2_deficient_mice_multiomics

This GitHub page saves the analysis workflow for the transcriptome and metagenome of mouse TM6SF2 mutation

KEMET

KEGG Module Evaluation Tool

microbiome

roary_analysis

Scripts for analyzing the output of Roary which can be found at: https://github.com/sanger-pathogens/Roary

CVTree

A whole-genome and alignment-free prokaryotic phylogeny tool

chuanfaliu/1.Manuscript_nature-microbiology_2023

code for manuscript of nature microbiology_2023

chuanfaliu/CRC_ARG

the supplementary file of Species-level analysis of the human gut microbiome shows antibiotic resistance genes associated with colorectal cancer

chuanfaliu/Groningen-Microbiome

Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen

chuanfaliu/Intestinal_TM6SF2_deficient_mice_multiomics

This GitHub page saves the analysis workflow for the transcriptome and metagenome of mouse TM6SF2 mutation

chuanfaliu/KEMET

KEGG Module Evaluation Tool

chuanfaliu/microbiome

chuanfaliu/roary_analysis

Scripts for analyzing the output of Roary which can be found at: https://github.com/sanger-pathogens/Roary