chucknordy

chucknordy's Stars

• realpython/python-guide

  Python best practices guidebook, written for humans.

  Language:Batchfile28.4k5.8k

• pycompression/xopen

  Open compressed files in Python

  Language:Python6815

• xzhoulab/DRComparison

  Comparison of dimensionality reduction methods

  Language:R3010

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k463

• koalaman/shellcheck

  ShellCheck, a static analysis tool for shell scripts

  Language:Haskell36.5k1.8k

• kimpenn/nofold

  Motif finder for RNA secondary structures

  Language:Python51

• c0fec0de/anytree

  Python tree data library

  Language:Python957134

• bwa-mem2/bwa-mem2

  The next version of bwa-mem

  Language:C++723101

• tmux/tmux

  tmux source code

  Language:C35.6k2.1k

• Stratus3D/dotfiles

  My dotfiles

  Language:Shell15617

• dwyl/english-words

  :memo: A text file containing 479k English words for all your dictionary/word-based projects e.g: auto-completion / autosuggestion

  Language:Python10.7k1.8k

• nedbat/gefilte

  Gefilte Fish GMail filter creator

  Language:Python473

• vanvalenlab/deepcell-tf

  Deep Learning Library for Single Cell Analysis

  Language:Python42799

• kimpenn/Argos

  R/shiny interface for interactive of data wrangling in TIPeR Project

  Language:R1

• kimpenn/Theia

  R/shiny interface for Kim Lab RNA-seq Pipeline Quality Control

  Language:R2

• ydLiu-HIT/deSALT

  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

  Language:C447

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k415

• Magdoll/cDNA_Cupcake

  Miscellaneous collection of Python and R scripts for processing Iso-Seq data

  Language:Python257104

• hbctraining/Accessing_public_genomic_data

  Tutorials on accessing public reference and genomic data

  Language:HTML2916

• hbctraining/Intro-to-rnaseq-hpc-salmon

  Language:HTML4730

• hbctraining/Intro-to-R

  Language:SCSS9256

• hbctraining/DGE_workshop

  Language:HTML375165

• medialab/iwanthue

  Colors for data scientists.

  Language:HTML64257

• PacificBiosciences/pbcore

  A Python library for reading and writing PacBio® data files

  Language:Python3926

• lavv17/lftp

  sophisticated command line file transfer program (ftp, http, sftp, fish, torrent)

  Language:C++1.1k162

• github/gitignore

  A collection of useful .gitignore templates

  163k83.1k

• cantinilab/momix-notebook

  Language:Jupyter Notebook6311

• grantjenks/python-sortedcontainers

  Python Sorted Container Types: Sorted List, Sorted Dict, and Sorted Set

  Language:Python3.6k206

• arturotorreso/plot-bamstats

  Parses output of samtools stats and uses the R graph interface to create plots. Based on Petr Daněček's perl plot-bamstats

  Language:R3

• magenta/magenta

  Magenta: Music and Art Generation with Machine Intelligence

  Language:Python19.2k3.7k