Churchill's Lab
Gary Churchill's Lab at The Jackson Laboratory
600 Main Street, Bar Harbor, Maine 04609, USA
Pinned Repositories
alntools
Preprocess bam file into a compressed alignment incidence matrix (equivalence class)
emase
Expectation-Maximization algorithm for Allele-Specific Expression
emase-zero
C++ Implementation of EMASE
g2gtools
Personal diploid genome creation and coordinate conversion
gbrs
Genotype-free genome reconstruction and ASE quantification
intermediate
small R utility for mediation analysis
kallisto-align
Export kallisto pseudo-alignments in a sparse binary matrix format
scBASE
A set of tools for accurate quantitation of single-cell allele-specific expression
scRATE
Bayesian model selection to detect zero-inflated genes
sysgen2015
Short Course on Systems Genetics 2015
Churchill's Lab's Repositories
churchill-lab/emase
Expectation-Maximization algorithm for Allele-Specific Expression
churchill-lab/g2gtools
Personal diploid genome creation and coordinate conversion
churchill-lab/scBASE
A set of tools for accurate quantitation of single-cell allele-specific expression
churchill-lab/gbrs
Genotype-free genome reconstruction and ASE quantification
churchill-lab/scRATE
Bayesian model selection to detect zero-inflated genes
churchill-lab/emase-zero
C++ Implementation of EMASE
churchill-lab/intermediate
small R utility for mediation analysis
churchill-lab/qtlapi
churchill-lab/alntools
Preprocess bam file into a compressed alignment incidence matrix (equivalence class)
churchill-lab/ensimplR-old
Simple R API into ensimpl data
churchill-lab/aseQTL
Allele-specific expression QTL (aseQTL) package
churchill-lab/ensimplR
churchill-lab/how-to-guide
A how-to guide to the Churchill Lab, The Jackson Laboratory, and Bar Harbor.
churchill-lab/qtl2tricks
churchill-lab/Utilities
R code to share among the group.
churchill-lab/AttieMetabolomics
Code for the Attie lab metabolite and lipid data
churchill-lab/cc_proteins
CC Protein Viewer. THERE IS CURRENTLY NO DOCUMENTATION.
churchill-lab/DeSNP
Tools for the CGD DeSNPing pipeline
churchill-lab/ensimpl
Simple API into Ensembl
churchill-lab/ensimpl_snps
churchill-lab/ImageEchelon
Tool to quantify images where meaningful differences are discernible by eye, but difficult to quantify using traditional methods.
churchill-lab/mouse_map_converter
churchill-lab/msbwt
A python toolkit for building and querying multi-string BWTs
churchill-lab/qtl-viewer
churchill-lab/qtl2api
Wrapper around rqtl/qtl2
churchill-lab/qtl2rest
Docker container for qtl2api R library.
churchill-lab/qtl2web
churchill-lab/simplerestrserve
A very simple Docker image for RestRserve
churchill-lab/svensonDO850-analysis
A collection of scripts for analyzing the Svenson DO850 data
churchill-lab/test