Pinned Repositories
ascii_art
While there is imagination, art is infinite. Here you will find tools to inspire your own art projects,
ctherm-gem
DataScience
dsbook
Repository for data science book
GeneReg
GeneReg facilitates the design of feasible metabolic engineering strategies at the gene level and is readily applicable to large-scale metabolic networks.
genome-scale-models
Genome scale metabolic models in SBML format
iML1515_GP
GEM-PRO for the E. coli iML1515 metabolic model
kinase_metabolism
Essential results & figure for Zelezniak et al, Cell Systems 2018 study
latex-thesis
LaTeX thesis tips
cihernand's Repositories
cihernand/iML1515_GP
GEM-PRO for the E. coli iML1515 metabolic model
cihernand/ascii_art
While there is imagination, art is infinite. Here you will find tools to inspire your own art projects,
cihernand/ctherm-gem
cihernand/DataScience
cihernand/dsbook
Repository for data science book
cihernand/GeneReg
GeneReg facilitates the design of feasible metabolic engineering strategies at the gene level and is readily applicable to large-scale metabolic networks.
cihernand/genome-scale-models
Genome scale metabolic models in SBML format
cihernand/kinase_metabolism
Essential results & figure for Zelezniak et al, Cell Systems 2018 study
cihernand/latex-thesis
LaTeX thesis tips
cihernand/Masters-Project
This is the main code for my master's project, in which enzymatic constraints were added to E. coli GEM iML1515 based on the GECKO method, and BOF estimation methods BTW and HIP were implemented, using Python.
cihernand/myflaskapp
Python Flask app with authentication
cihernand/programming-workshops
Materials for the BRITE-REU programming workshops
cihernand/Py4Bio
Public data for the book Python for Bioinformatics
cihernand/queerfest
cihernand/regression_models
Makes multiple regression models using caret approach
cihernand/RetroPathRL
Reinforcement Learning based bioretrosynthesis tool
cihernand/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
cihernand/roadrunner
libRoadRunner: A high-performance SBML simulator
cihernand/SalisLabCode
Models, design algorithms, and other software related to Salis lab publications
cihernand/tryFBA
implement metabolic flux balance analysis using iML1515 model
cihernand/webapp_raspberrypi
Low cost software and hardware creates the opportunity to bring empowering technology to people with low-budget. In this project I hope the people learn to install an operating system and the software needed to design a website using a raspberry pi. Prototyped source code to design the website will be tested in advance to be re-used during the session. The structure of the code will be modular and flexible to incorporate people ideas.