Pinned Repositories
akuma
Embeddable daemonization library
attaching_jshell
Attach Java 9's JShell to already-running virtual machine
ChIP-GPT-llm
Code to train and run Llama-based model to extract data from SRA records
furious-objectpool
Automatically exported from code.google.com/p/furious-objectpool
GNU_Trove
Fork of GNU Trove Bitbucket repository, with extra methods to be used with lambdas
javac_bug
MEME
MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks
mutinack
Mutation detection program
parismi
Pipeline for 3D segmentation and analysis of biological sample images
pitest
State of the art mutation testing system for the JVM
cinquin's Repositories
cinquin/attaching_jshell
Attach Java 9's JShell to already-running virtual machine
cinquin/MEME
MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks
cinquin/ChIP-GPT-llm
Code to train and run Llama-based model to extract data from SRA records
cinquin/parismi
Pipeline for 3D segmentation and analysis of biological sample images
cinquin/mutinack
Mutation detection program
cinquin/akuma
Embeddable daemonization library
cinquin/bam-readcount
count DNA sequence reads in BAM files
cinquin/GNU_Trove
Fork of GNU Trove Bitbucket repository, with extra methods to be used with lambdas
cinquin/javac_bug
cinquin/pitest
State of the art mutation testing system for the JVM
cinquin/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences; edited to compile under FreeBSD
cinquin/eclipse-collections
The Eclipse Collections Project
cinquin/error-prone
Catch common Java mistakes as compile-time errors
cinquin/fast-serialization
FST: fast java serialization drop in-replacement http://ruedigermoeller.github.io/fast-serialization/
cinquin/final_annotation
cinquin/gleason_CNN
cinquin/guava
Google Core Libraries for Java
cinquin/honest-profiler
A sampling JVM profiler without the safepoint sample bias
cinquin/htslib
C library for high-throughput sequencing data formats
cinquin/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
cinquin/jmh
Git import of http://hg.openjdk.java.net/code-tools/jmh, with modifications to add Generated annotations
cinquin/jq
Command-line JSON processor
cinquin/LASER
LASER: Locating Ancestry from SEquence Reads
cinquin/nailgun
Nailgun is a client, protocol, and server for running Java programs from the command line without incurring the JVM startup overhead.
cinquin/openssl
OpenSSL bindings for R
cinquin/pathvisio
PathVisio
cinquin/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
cinquin/rmiio
Mirror of the RMIIO project: http://openhms.sourceforge.net/rmiio/
cinquin/StoCySim
cinquin/XChart
XChart is a light weight Java library for plotting data.