cizydorczyk

Pinned Repositories

All-PA-PhD
Notebooks & code for "all-pa" analyses (final set of PA analyses for inferring transmission).
Language:HTML0 1 00
ARC
Scripts for creating various jobs for running on ARC.
Language:Python0 1 00
bash_scripts
Language:Shell0 0 00
conda-envs-phd
0 1 00
cpe-2024
CPE 2024 analyses.
Language:Python00
Epi-of-MSSA-with-B-lactam-inoculum-effects-in-CF
Language:Python0 1 00
genomics-tutorials
A range of tutorials for microbial genomics.
0 1 00
grad_school_scripts
Language:Jupyter Notebook0 0 00
LES_Analyses
Language:Jupyter Notebook0 1 00
PA_Transmission_Manuscript_Supplementary_Figures_Tables
0 1 00

cizydorczyk's Repositories

cizydorczyk/All-PA-PhD
Notebooks & code for "all-pa" analyses (final set of PA analyses for inferring transmission).
Language:HTML0 1 00
cizydorczyk/ARC
Scripts for creating various jobs for running on ARC.
Language:Python0 1 00
cizydorczyk/bash_scripts
Language:Shell0 0 00
cizydorczyk/conda-envs-phd
0 1 00
cizydorczyk/cpe-2024
CPE 2024 analyses.
Language:Python00
cizydorczyk/Epi-of-MSSA-with-B-lactam-inoculum-effects-in-CF
Language:Python0 1 00
cizydorczyk/genomics-tutorials
A range of tutorials for microbial genomics.
0 1 00
cizydorczyk/grad_school_scripts
Language:Jupyter Notebook0 0 00
cizydorczyk/LES_Analyses
Language:Jupyter Notebook0 1 00
cizydorczyk/PA_Transmission_Manuscript_Supplementary_Figures_Tables
0 1 00
cizydorczyk/PAEarlyInfCF
A repository for scripts used in the manuscript "Pseudomonas aeruginosa strain sharing in early infection among children with cystic fibrosis"
Language:Shell0 1 00
cizydorczyk/python_scripts
Language:Python0 0 10
cizydorczyk/Snakemake-SNP-Calling-Pipeline
A Snakemake version of the i18 SNP calling pipeline.
Language:HTML0 1 00