Pinned Repositories
All-PA-PhD
Notebooks & code for "all-pa" analyses (final set of PA analyses for inferring transmission).
ARC
Scripts for creating various jobs for running on ARC.
bash_scripts
conda-envs-phd
Epi-of-MSSA-with-B-lactam-inoculum-effects-in-CF
genomics-tutorials
A range of tutorials for microbial genomics.
grad_school_scripts
LES_Analyses
PA_Transmission_Manuscript_Supplementary_Figures_Tables
PAEarlyInfCF
A repository for scripts used in the manuscript "Pseudomonas aeruginosa strain sharing in early infection among children with cystic fibrosis"
cizydorczyk's Repositories
cizydorczyk/All-PA-PhD
Notebooks & code for "all-pa" analyses (final set of PA analyses for inferring transmission).
cizydorczyk/ARC
Scripts for creating various jobs for running on ARC.
cizydorczyk/bash_scripts
cizydorczyk/conda-envs-phd
cizydorczyk/Epi-of-MSSA-with-B-lactam-inoculum-effects-in-CF
cizydorczyk/genomics-tutorials
A range of tutorials for microbial genomics.
cizydorczyk/grad_school_scripts
cizydorczyk/LES_Analyses
cizydorczyk/PA_Transmission_Manuscript_Supplementary_Figures_Tables
cizydorczyk/PAEarlyInfCF
A repository for scripts used in the manuscript "Pseudomonas aeruginosa strain sharing in early infection among children with cystic fibrosis"
cizydorczyk/python_scripts
cizydorczyk/Snakemake-SNP-Calling-Pipeline
A Snakemake version of the i18 SNP calling pipeline.