cjcarlson
Global change biologist: biodiversity loss, climate change, emerging disease, and planetary health
@carlsonlabWashington, D.C.
cjcarlson's Stars
colebrookson/urbanfox
Dashboard and code for understanding the distribution of urban foxes and canine distemper in Berlin :fox_face:
tpoisot/BART.jl
Cowabunga!
mayer79/partialPlot
Partial dependency plots in R for xgboost, lightGBM and ranger objects
ModelOriented/shapviz
SHAP Plots in R
colebrookson/pharos-core
Workflows to format & standardize data into the Pharos data standard for upload :high_brightness:
jsoghigian/culicitree
Nardus/zoonotic_rank
Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".
saedoquililongo/climQMBC
A package with multiple bias correction methods for climatic variables, including the QM, DQM, QDM, UQM, and SDM methods.
clauswilke/multiscales
Multivariate scales for ggplot2
cghss/IHR-costing
Data to help users generate and review cost estimates to support practical planning for sustainable capacity development to prevent, detect, and respond to public health threats, as defined by the International Health Regulations (IHR)
RILAB/statements
Successful Job Applications and Grants
rspatial/terra
R package for spatial data handling https://rspatial.github.io/terra/reference/terra-package.html
mauriciovancine/bivarmap
cxli233/Online_R_learning
Online R learning for applied statistics
EmilHvitfeldt/r-color-palettes
Comprehensive list of color palettes available in R โค๏ธ๐งก๐๐๐๐
arsweeny/bestinbloom
A package exclusively for chaotic Yan and Henck outfit palettes
rorygibb/pathogen_discovery
Virus discovery rates in mammal hosts
choonghyunryu/dlookr
Tools for Data Diagnosis, Exploration, Transformation
viralemergence/haystack
Zoonotic risk prediction with the embedded LF-SVD model
viralemergence/virion
The Global Virome in One Network
viralemergence/insectDisease
An R package for working with the Ecological Database of the World's Insect Pathogens (EDWIP)
pbs-assess/sdmTMB
:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB
USEPA/elevatr
An R package for accessing elevation data
ramzan1990/sequence2vec
PoisotLab/NCBITaxonomy.jl
Wrapper around the NCBI taxonomy files
mmd106/Conflict-and-infectious-disease
vdorie/stan4bart
Uses Stan sampler and math library to semiparametrically fit linear and multilevel models with additive Bayesian Additive Regression Tree (BART) components.
eeg31/henipavirus-detection
eeg31/generalSEIR
eeg31/eco-epi