Pinned Repositories
augur-nf
Nextflow implementation of Nextstrain's Augur pipeline
Bacillus_anthracis_PXO1
Phylogenetic analsysis of Bacillus Anthracis virulence plasmid Pxo1
bioconda-recipes
Conda recipes for the bioconda channel.
Cecret
Nextflow workflow for our analysis of SARS-COV-2
CJ
cjjossart
Config files for my GitHub profile.
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
EDS611a
For the final presentation
github_tutorial
hello-world
cjjossart's Repositories
cjjossart/augur-nf
Nextflow implementation of Nextstrain's Augur pipeline
cjjossart/Bacillus_anthracis_PXO1
Phylogenetic analsysis of Bacillus Anthracis virulence plasmid Pxo1
cjjossart/bioconda-recipes
Conda recipes for the bioconda channel.
cjjossart/Cecret
Nextflow workflow for our analysis of SARS-COV-2
cjjossart/CJ
cjjossart/cjjossart
Config files for my GitHub profile.
cjjossart/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
cjjossart/EDS611a
For the final presentation
cjjossart/github_tutorial
cjjossart/hello-world
cjjossart/InfectiousDiseaseMortality
Infectious Disease Mortality and Environmental Factors
cjjossart/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
cjjossart/mycosnp-bwa-reference
This workflow prepares a reference index using BWA as part of the MycoSNP suite of workflows.
cjjossart/mycosnp-nf
nf-core/mycosnp
cjjossart/nf-core-awsomicstest
cjjossart/postrun_scripts
This repository houses wrapper scripts for various Bioinformatics workflows.
cjjossart/qc_reports
cjjossart/spriggan
Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.
cjjossart/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples