This is a macro set that we use to batch process images from various microscopes, usually multi-channels single-plane images or multi-channels z-stacks. It uses Bio-Formats for importing proprietary formats, and performs successive processing steps (projections, background subtraction, unsharp masking...). It is designed to be used on all images from an experiment, grouped in a single input folder. It ultimately provides unprocessed single-channel stacks for quantification, and a processed overlay hyperstack for exploring and visualizing the images.
More information (installation, tutorial…) can be found here: http://www.evernote.com/l/AAIe_410ld9Cg5OSowuL2T-zHq12e8SE0TU