ClinDet
Clinical diagnostic tools developed by research groups of National Research Center for Translational Medicine at Shanghai.
China
Pinned Repositories
agmin
A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.
anor
anor: an annotation and visualization system based on R and Shiny framework
bget
Portable command-line tool to query bioinformatics APIs, data, databases and files.
bioctl
A simple command line tool to facilitate the data analysis.
bioextr
Extract information from text or json data.
chromedp
A faster, simpler way to drive browsers supporting the Chrome DevTools Protocol.
clinaml
Robust prediction of the major gene expression profiling (GEP)-defined subgroups and the GEP-plus risk scores in AML.
clindet
A fully automated multi-omics data analysis pipeline based on Snakemake and singularity.
easyfuse
Modified version for LDT: EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
rctl
A set of command line tools based on R and JavaScript.
ClinDet's Repositories
clindet/bget
Portable command-line tool to query bioinformatics APIs, data, databases and files.
clindet/anor
anor: an annotation and visualization system based on R and Shiny framework
clindet/rctl
A set of command line tools based on R and JavaScript.
clindet/bioctl
A simple command line tool to facilitate the data analysis.
clindet/bioextr
Extract information from text or json data.
clindet/agmin
A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.
clindet/clindet
A fully automated multi-omics data analysis pipeline based on Snakemake and singularity.
clindet/clinaml
Robust prediction of the major gene expression profiling (GEP)-defined subgroups and the GEP-plus risk scores in AML.
clindet/chromedp
A faster, simpler way to drive browsers supporting the Chrome DevTools Protocol.
clindet/easyfuse
Modified version for LDT: EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.