Code and data for guided auto encoder and immunology data analysis.
This is a python package that is distributed with the aim on ensuring reproducibility. The code was designed and tested to work specifically with the data in the package.
- Figures and toy examples for Guided Auto Encoder:
gae_toy.py
- Cross-validation experiment on GAE and Extraction of Immune Age:
gae_immuneAge.py
- Analysis of features' distributions in immune data:
immune_feature_distribution.py
- Immunology monotype identifcation:
immune_type.py
- Immunology Gene expression analysis:
immune_gene_analysis.py
Please reference this repository's URL if using the code.
(C) Copyright 2017 Tianxiang Gao
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.