clintval/sample-sheet

Supporting TrueSight 170 sample sheets

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slagelwa commented

Would be wonderful if it supported the TrueSight 170 style sample sheets.

clintval commented

Could you provide an example or a link to documentation on the file format?

slagelwa commented

Absolutely. It's pretty straightforward. There's an additional "Manifest" section in the sample sheet that contains name/filename pairs (typically PoolRNA,MixRNA_Manifest.txt and PoolDNA,MixDNA_Manifest.txt) which are then used in the samples section via an additional Manifest column whose value must match what's in the manifest section PoolRNA or PoolDNA).

Here's the illumina product page:

https://www.illumina.com/products/by-type/clinical-research-products/trusight-tumor-170.html

And an example file:

https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/trusight/trusight-tumor-170/trusight-tumor-170-v1-0-local-app-sample-sheet-template-1000000038524-00.zip

And the manual contains a good description of the sample sheet:

https://support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/trusight/trusight-tumor-170/trusight-tumor-170-v1-0-local-app-user-guide-1000000036413-00.pdf

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clintval commented

Thanks! I'll add this in for another release. I've been meaning to support the [Manifests] section including arbitrary user-defined sections which is allowable by the general Illumina Sample Sheet specification.

slagelwa commented
clintval commented

Ok all set here! This library is still young so feel free to write back if you need more out of it!