clintval/sample-sheet

Issues

• Feature Request: SampleSheet v2 support

  #104 opened 4 years ago by reisingerf
  9

• Add option do deactivate sanity check for reading sample sheets and adding samples

  #122 opened 2 years ago by alexblaessle
  0

• PE + Multi index

  #121 opened 2 years ago by alienzj
  2

• validator

  #105 opened 4 years ago by colindaven
  7

• Do you support custom application settings and data sections? does Illumina?

  #126 opened a year ago by slagelwa
  1

• Sample_ID validation

  #125 opened 2 years ago by nathanweeks
  0

• Appetite for looking up samples by Sample_ID

  #119 opened 2 years ago by nh13
  1

• Feature request: support read structures like `+T`

  #120 opened 2 years ago by nh13
  1

• test_to_picard_basecalling_params_output_files fails on MacOS

  #116 opened 3 years ago by dsommer
  0

• Confusing error on file with no sections

  #115 opened 3 years ago by dsommer
  0

• Request - handling nonstandard tables

  #110 opened 4 years ago by stephen-tanner
  1

• Issue1: special character

  #112 opened 3 years ago by gaurav-basesolve
  0

• relationship with PEP

  #111 opened 3 years ago by nsheff
  1

• Index validation on indexes with spaces at the end

  #109 opened 4 years ago by golharam
  0

• Validations should be parameterized. Such as for 10x indexes vs Illumina.

  #96 opened 5 years ago by clintval
  0

• Intended behavior of empty samplesheet with missing sections

  #108 opened 4 years ago by golharam
  1

• index validation

  #107 opened 4 years ago by golharam
  2

• How to update the sample sheet object?

  #106 opened 4 years ago by vlakhujani
  1

• Support comments

  #101 opened 5 years ago by ElDeveloper
  2

• Error parsing samplesheet

  #98 opened 5 years ago by golharam
  1

• Support Python2

  #100 opened 5 years ago by clintval
  1

• CellRanger indexes are not recognized

  #92 opened 5 years ago by golharam
  7

• package fails installing on Windows

  #90 opened 5 years ago by reisingerf
  1

• smart_open Version 1.8.1 Incompatibilities

  #80 opened 5 years ago by BennettRand
  6

• Installation issues

  #82 opened 5 years ago by mivade
  8

• Make `requests` installation mandatory or drop dependency support

  #73 opened 6 years ago by clintval
  1

• Offline test support for doctests

  #72 opened 6 years ago by clintval
  0

• Best practices badge?

  #75 opened 6 years ago by clintval
  0

• Conda package

  #74 opened 6 years ago by clintval
  1

• Bugs on README

  #68 opened 6 years ago by clintval
  0

• Cleaner and more explicit documentation

  #20 opened 7 years ago by clintval
  5

• Create a conda recipe

  #19 opened 6 years ago by clintval
  1

• Order of columns in Data section

  #52 opened 6 years ago by reisingerf
  5

• Duplicated Sample_ID

  #53 opened 6 years ago by reisingerf
  16

• Index vs index

  #51 opened 6 years ago by slagelwa
  2

• Move tutorial to readthedocs.com

  #55 opened 6 years ago by clintval
  1

• Use Optional instead of Union[None, ...]

  #50 opened 6 years ago by clintval
  1

• Support for empty lines

  #48 opened 7 years ago by CarlosBorroto
  5

• Error when attempting to parse non-comma-padded sample sheet files

  #46 opened 7 years ago by andybearman
  5

• Error installing with pip

  #45 opened 7 years ago by nuin
  5

• Output as json

  #41 opened 7 years ago by slagelwa
  3

• Experimental support SampleCollections and Loading_ID

  #31 opened 7 years ago by clintval
  1

• Supporting TrueSight 170 sample sheets

  #37 opened 7 years ago by slagelwa
  5

• Same sample ID on multiple lanes causes error

  #32 opened 7 years ago by reisingerf
  9

• Review and update `add_sample` docstring

  #18 opened 7 years ago by clintval
  0

• Use type annotations

  #17 opened 7 years ago by clintval
  0

• __iter__() should be a generator

  #29 opened 7 years ago by clintval
  0

• Unit test for IPython Interpreters

  #30 opened 7 years ago by clintval
  1

• Samples to have `sample_sheet` reference when instantiated through parsing

  #27 opened 7 years ago by clintval
  0

• Re-write a few un-Pythonic lines

  #21 opened 7 years ago by clintval
  2