Pinned Repositories
asm_tools
Assembly utility scripts used to assemble bacterial isolates sequenced on Illumina paired-end sequencers
blast-validate
BLAST-based validation of metagenomic sequence assignments
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
aws-glue-libs
AWS Glue Libraries are additions and enhancements to Spark for ETL operations.
aws-scripts
aws-scripts
backend-GPT
bioconda-recipes
Conda recipes for the bioconda channel.
bioFreelancers
Freelance bioinformaticians directory
commons
Common scala utilities
metAMOS
A metagenomic and isolate assembly and analysis pipeline built with AMOS
dsommer's Repositories
dsommer/dot
Dot: An interactive dot plot viewer for comparative genomics
dsommer/alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
dsommer/aws-glue-libs
AWS Glue Libraries are additions and enhancements to Spark for ETL operations.
dsommer/aws-scripts
aws-scripts
dsommer/backend-GPT
dsommer/bioconda-recipes
Conda recipes for the bioconda channel.
dsommer/bioFreelancers
Freelance bioinformaticians directory
dsommer/cat_singularity
singularity builds for cat
dsommer/commons
Common scala utilities
dsommer/conda
Specifying a conda environment with `environment.yml`
dsommer/deepLearningBook-Notes
Notes on the Deep Learning book from Ian Goodfellow, Yoshua Bengio and Aaron Courville (2016)
dsommer/dnanexus-example-applets
Examples and tutorials for app(let) developers:
dsommer/fgbio
Tools for working with genomic and high throughput sequencing data.
dsommer/fgpyo
dsommer/fpinscala
Code, exercises, answers, and hints to go along with the book "Functional Programming in Scala"
dsommer/hstr
Bash and Zsh shell history suggest box - easily view, navigate, search and manage your command history.
dsommer/klib
A standalone and lightweight C library
dsommer/ksw2
Global alignment and alignment extension
dsommer/MetaCarvel
MetaCarvel: A scaffolder for metagenomes
dsommer/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
dsommer/robin-hood-hashing
Fast & memory efficient hashtable based on robin hood hashing for C++11/14/17/20
dsommer/sample-sheet
A permissively licensed library designed to replace Illumina's Experiment Manager
dsommer/seqtk
Toolkit for processing sequences in FASTA/Q formats
dsommer/style-guide
Style Guide
dsommer/TF-2.0-Hacks
Contains my explorations of TensorFlow 2.0
dsommer/tinygrad
You like pytorch? You like micrograd? You love tinygrad! ❤️