Pinned Repositories
ChromViewer
Simple Java-based chromatogram viewer
FastQC
FastQC from http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
flask-boto3
Flask extension that ties boto3 connectors to the application context
funnel
Funnel is a toolkit for distributed task execution via a simple, standard API.
NGS360-FlaskApp
rgtools
Collection of tools for NGS use
SubSampleFastq
A simple program that will "randomly" sub sample a fastq file.
tes-azure
A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute
golharam's Repositories
golharam/NGS360-FlaskApp
golharam/flask-boto3
Flask extension that ties boto3 connectors to the application context
golharam/amazon-ebs-autoscale
Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.
golharam/funnel
Funnel is a toolkit for distributed task execution via a simple, standard API.
golharam/PAML
golharam/tes-azure
A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute
golharam/argon-dashboard-flask
Argon Dashboard - Flask Template | Creative-Tim
golharam/aws-genomics-workflows
Genomics Workflows on AWS
golharam/cgl-docker-lib
golharam/chatbot-frontend
A simple chatbot frontend made using bootstrap and jquery
golharam/CNV-P
a novel and post–processing approach for CNV filtering
golharam/cohort-matcher
Cohort-matcher
golharam/cwl-graph-generate
Generates https://view.commonwl.org/ like workflows images, showing a complete workflow.
golharam/Deep-Learning-for-Genomics-
golharam/docker-chromium-xvfb
Docker image for running browser tests against headless Chromium
golharam/engineer-manager
A list of engineering manager resource links.
golharam/EthSEQ
Ethnicity Annotation from Whole Exome Sequencing Data
golharam/Fargate-ECSCluster-Cloudformation
golharam/fingerprint_maps
Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of functional genomic data.
golharam/genomics
Scripts, utilities and programs for genomic bioinformatics.
golharam/labs
Rmd source files for the HarvardX series PH525x
golharam/material-dashboard-flask
Material Dashboard - Flask Template | Creative-Tim
golharam/md2conf
Publish Markdown files to Confluence wiki
golharam/python-package-template
A template repo for Python packages
golharam/Rasa-Chatbot-UI
A responsive U.I design plugin for your rasa chatbot.
golharam/release-version-increment
Setup version increment and automated release process
golharam/sample-sheet
A permissively licensed library designed to replace Illumina's Experiment Manager
golharam/samplesheetjs
Illumina Sample Sheet JavaScript Parser
golharam/sbpack
Command line utility to pack and upload/download CWL to/from SB powered platform
golharam/wwiv
WWIV BBS Software v5