cmorganl
Bioinformatics post-doc with Steven Hallam (@hallamlab) at UBC and @Koonkie-Cloud-Services. Interested in microbial genomics, evolution and metabolism.
@hallamlab Montreal, Canada
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
Gene_Centric_Guide
KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
LCAStar
Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
MeatLoaf
It has a little bit of everything.
MICB405-Metagenomics
A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics
MICB425
Capstone project information for MICB425.
RefPkgs
Repository for TreeSAPP reference packages
samsum
A light-weight python package for summarizing sequence coverage from SAM and BAM files
TreeSAPP
A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
cmorganl's Repositories
cmorganl/MICB405-Metagenomics
A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics
cmorganl/bioconda-recipes
Conda recipes for the bioconda channel.
cmorganl/Gene_Centric_Guide
cmorganl/KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
cmorganl/LCAStar
Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
cmorganl/MeatLoaf
It has a little bit of everything.
cmorganl/pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files