cmorganl
Bioinformatics post-doc with Steven Hallam (@hallamlab) at UBC and @Koonkie-Cloud-Services. Interested in microbial genomics, evolution and metabolism.
@hallamlab Montreal, Canada
cmorganl's Stars
spacegraphcats/spacegraphcats
Indexing & querying large assembly graphs -- in space, no one can hear you miao!
ablab/quast
Genome assembly evaluation tool
donovan-h-parks/PhyloRank
Assign taxonomic ranks based on evolutionary divergence.
lh3/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
BioInf-Wuerzburg/proovread
PacBio hybrid error correction through iterative short read consensus
amkozlov/raxml-ng
RAxML Next Generation: faster, easier-to-use and more flexible
lczech/genesis
A library for working with phylogenetic and population genetic data.
Ecogenomics/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
CAMI-challenge/CAMITAX
CAMITAX: Taxon labels for microbial genomes
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
soedinglab/plass
sensitive and precise assembly of short sequencing reads
lskatz/mashtree
:deciduous_tree: Create a tree using Mash distances
geronimp/graftM
GraftM - Rapid community profiles from metagenomes
ruanjue/wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
shenwei356/taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
tseemann/mokka
Annotate your metagenome assemblies
LomanLab/mockcommunity
Long-read mock community experiments
pierrebarbera/epa-ng
Massively parallel phylogenetic placement of genetic sequences
Cibiv/IQ-TREE
Efficient phylogenomic software by maximum likelihood
sourmash-bio/sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
marbl/MashMap
A fast approximate aligner for long DNA sequences
YuLab-SMU/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
hyattpd/Prodigal
Prodigal Gene Prediction Software
stephenturner/oneliners
Useful bash one-liners for bioinformatics.
marbl/canu
A single molecule sequence assembler for genomes large and small.
marbl/Mash
Fast genome and metagenome distance estimation using MinHash
lh3/miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
thegenemyers/DALIGNER
Find all significant local alignments between reads